Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tfu_1897 | Tfu_2221 | Tfu_1897 | Tfu_2221 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | uroporphyrinogen-III C-methyltransferase. | 0.529 |
Tfu_1897 | Tfu_2701 | Tfu_1897 | Tfu_2701 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | CcsB. | 0.461 |
Tfu_1897 | Tfu_2704 | Tfu_1897 | Tfu_2704 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Conserved hypothetical protein. | 0.523 |
Tfu_1897 | Tfu_2730 | Tfu_1897 | Tfu_2730 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.608 |
Tfu_1897 | Tfu_2731 | Tfu_1897 | Tfu_2731 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase. | 0.656 |
Tfu_1897 | hemA | Tfu_1897 | Tfu_2733 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.658 |
Tfu_1897 | hemC | Tfu_1897 | Tfu_2732 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.761 |
Tfu_1897 | hemE | Tfu_1897 | Tfu_1899 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.998 |
Tfu_1897 | hemL | Tfu_1897 | Tfu_2726 | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.585 |
Tfu_2221 | Tfu_1897 | Tfu_2221 | Tfu_1897 | uroporphyrinogen-III C-methyltransferase. | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | 0.529 |
Tfu_2221 | Tfu_2701 | Tfu_2221 | Tfu_2701 | uroporphyrinogen-III C-methyltransferase. | CcsB. | 0.568 |
Tfu_2221 | Tfu_2730 | Tfu_2221 | Tfu_2730 | uroporphyrinogen-III C-methyltransferase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.925 |
Tfu_2221 | Tfu_2731 | Tfu_2221 | Tfu_2731 | uroporphyrinogen-III C-methyltransferase. | uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase. | 0.996 |
Tfu_2221 | gltX | Tfu_2221 | Tfu_0623 | uroporphyrinogen-III C-methyltransferase. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.466 |
Tfu_2221 | hemA | Tfu_2221 | Tfu_2733 | uroporphyrinogen-III C-methyltransferase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.884 |
Tfu_2221 | hemC | Tfu_2221 | Tfu_2732 | uroporphyrinogen-III C-methyltransferase. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.994 |
Tfu_2221 | hemE | Tfu_2221 | Tfu_1899 | uroporphyrinogen-III C-methyltransferase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.961 |
Tfu_2221 | hemL | Tfu_2221 | Tfu_2726 | uroporphyrinogen-III C-methyltransferase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.849 |
Tfu_2701 | Tfu_1897 | Tfu_2701 | Tfu_1897 | CcsB. | UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. | 0.461 |
Tfu_2701 | Tfu_2221 | Tfu_2701 | Tfu_2221 | CcsB. | uroporphyrinogen-III C-methyltransferase. | 0.568 |
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