STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17205.1TM2 domain protein; KEGG: clu:CLUG_03974 1.0e-11 hypothetical protein; K12619 5'-3' exoribonuclease 2; Psort location: CytoplasmicMembrane, score: 9.55. (182 aa)    
Predicted Functional Partners:
KXA16645.1
KEGG: gvh:HMPREF9231_0965 0. pheT; phenylalanine--tRNA ligase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
       0.692
KXA16199.1
DNA topoisomerase I; KEGG: gvh:HMPREF9231_1284 0. topA; DNA topoisomerase I K03168; Psort location: Cytoplasmic, score: 9.67.
       0.593
KXA17204.1
dephospho-CoA kinase; KEGG: gvg:HMPREF0421_20978 2.5e-100 coaE; dephospho-CoA kinase K00859; Psort location: Cytoplasmic, score: 7.50.
       0.587
KXA15737.1
Cyclic nucleotide-binding domain protein; KEGG: bde:BDP_1802 3.4e-89 Crp family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
       0.514
KXA15738.1
Transglycosylase; KEGG: bde:BDP_1801 8.4e-251 Penicillin-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.513
KXA15736.1
KEGG: gvh:HMPREF9231_1164 0. peptidase, S9A/B/C family, catalytic domain protein K01354; Psort location: Cytoplasmic, score: 7.50.
       0.509
KXA15735.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.454
UvrB
Excinuclease ABC, B subunit; KEGG: gvg:HMPREF0421_20977 0. uvrB; excision endonuclease subunit UvrB K03702; Psort location: Cytoplasmic, score: 9.97.
       0.441
KXA15376.1
KEGG: gvg:HMPREF0421_20748 8.6e-194 pyrB; aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.97.
       0.426
KXA17128.1
Hypothetical protein; KEGG: gvh:HMPREF9231_0594 2.8e-14 coaE; dephospho-CoA kinase K00859.
       0.408
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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