STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA16835.1KEGG: gvh:HMPREF9231_0328 1.3e-117 TrmH family RNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase. (238 aa)    
Predicted Functional Partners:
KXA16833.1
Putative membrane protein; KEGG: bqy:MUS_4455 6.2e-33 ydeD; phosphate acetyltransferase (phosphotransacetylase); Psort location: CytoplasmicMembrane, score: 10.00.
       0.792
KXA16836.1
Hypothetical protein.
       0.751
KXA15260.1
Triose-phosphate isomerase; KEGG: gvg:HMPREF0421_20768 1.5e-127 tpiA; triose-phosphate isomerase K01803; Psort location: Cytoplasmic, score: 9.97.
      0.739
KXA17133.1
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein; KEGG: gvg:HMPREF0421_20985 8.2e-150 folD; bifunctional methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase K01491; Psort location: Cytoplasmic, score: 7.50.
  
    0.680
KXA16427.1
KEGG: gvh:HMPREF9231_0392 1.1e-90 RsmD family RNA methyltransferase; K08316 16S rRNA (guanine966-N2)-methyltransferase.
 
  
 0.592
KXA17217.1
RNA methyltransferase; KEGG: gvh:HMPREF9231_0612 8.9e-137 RsmE family RNA methyltransferase K09761; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.572
KXA16834.1
Hypothetical protein.
       0.572
KXA15541.1
Trigger factor; KEGG: gvh:HMPREF9231_0915 5.8e-220 tig; trigger factor K03545; Psort location: Cytoplasmic, score: 7.50.
 
    0.541
KXA17041.1
KEGG: gvh:HMPREF9231_1125 2.7e-112 putative tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.529
KXA15536.1
NAD+ synthase; KEGG: gvg:HMPREF0421_20632 3.3e-297 nadE; NH(3)-dependent NAD+ synthetase K01950; Psort location: Cytoplasmic, score: 7.50.
  
    0.511
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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