STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_0041L-ribulose-5-phosphate 4-epimerase. (235 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.973
CHK_0984
L-xylulose 5-phosphate 3-epimerase.
  
 0.940
araB
Ribulokinase.
  
 
 0.928
CHK_0447
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.873
araB-2
Ribulokinase.
  
 
 0.835
CHK_0091
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.757
CHK_0797
Alpha-galactosidase.
   
 
 0.687
CHK_0051
Ribulose-5-phosphate 4-epimerase.
  
  
  0.655
CHK_0720
Ribulose-5-phosphate 4-epimerase.
  
  
  0.654
CHK_1865
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
   
    0.641
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.