STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHK_2167Arabinose 5-phosphate isomerase. (202 aa)    
Predicted Functional Partners:
CHK_2166
L-ribulose-5-phosphate 4-epimerase.
  
    0.708
araB-2
Ribulokinase.
      0.679
CHK_2247
Ribose 5-phosphate isomerase B.
  
 
 0.667
CHK_2168
Arabinose 5-phosphate isomerase.
 
   
0.604
CHK_2164
D-tagatose 3-epimerase.
  
    0.586
CHK_2983
Arabinose 5-phosphate isomerase.
  
  
 
0.579
CHK_0107
Hypothetical protein.
  
  
 
0.573
CHK_2809
Arabinose 5-phosphate isomerase.
  
  
 
0.573
CHK_2163
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
      0.505
CHK_2162
Ribose ABC transport system, permease protein RbsC; TCDB 3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family.
       0.476
Your Current Organism:
Catabacter hongkongensis
NCBI taxonomy Id: 270498
Other names: C. hongkongensis, CCUG 54229, Catabacter hongkongensis Lau et al. 2014, JCM 17853, strain HKU16
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