STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI03339.1Hypothetical protein. (413 aa)    
Predicted Functional Partners:
SEI03351.1
Bacterial condensin subunit MukE.
 
    0.921
SEI03360.1
Hypothetical protein.
 
     0.903
SEI07008.1
HDOD domain-containing protein.
  
     0.774
SEH52584.1
Transcriptional regulator, TetR family.
  
     0.767
SEI06510.1
Conserved hypothetical protein.
  
     0.762
SEI07065.1
Uncharacterized membrane protein affecting hemolysin expression.
  
     0.761
SEH57587.1
Curli production assembly/transport component CsgE.
  
     0.746
csgE
Curli production assembly/transport component CsgE.
  
     0.743
SEI02315.1
Protein of unknown function, DUF481.
  
     0.736
SEH52940.1
Uncharacterized conserved protein, contains GH25 family domain.
  
     0.733
Your Current Organism:
Pseudomonas xanthomarina
NCBI taxonomy Id: 271420
Other names: CCUG 46543, DSM 18231, JCM 12468, NRIC 0617, P. xanthomarina, Pseudomonas xanthomarina Romanenko et al. 2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.