Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APE_0510.1 | APE_0514 | APE_0510.1 | APE_0514 | Putative GTP-binding protein. | RNA (cytosine-C(5)-)-methyltransferase. | 0.851 |
| APE_0510.1 | APE_0516.1 | APE_0510.1 | APE_0516.1 | Putative GTP-binding protein. | Hypothetical protein; Belongs to the UPF0113 family. | 0.969 |
| APE_0510.1 | APE_1443.1 | APE_0510.1 | APE_1443.1 | Putative GTP-binding protein. | Conserved hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.958 |
| APE_0510.1 | APE_2199.1 | APE_0510.1 | APE_2199.1 | Putative GTP-binding protein. | snoRNA binding protein; aNOP56. | 0.934 |
| APE_0510.1 | nep1 | APE_0510.1 | APE_0502 | Putative GTP-binding protein. | Ribosome biogenesis protein NEP1; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.568 |
| APE_0510.1 | rpl30p | APE_0510.1 | APE_0345.1 | Putative GTP-binding protein. | 50S ribosomal protein L30P. | 0.974 |
| APE_0510.1 | rpl7ae | APE_0510.1 | APE_1818 | Putative GTP-binding protein. | 50S ribosomal protein L7Ae/small nucleolar RNP protein Snu13p/Nhp2P; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.858 |
| APE_0510.1 | rplP0 | APE_0510.1 | APE_2171.1 | Putative GTP-binding protein. | 50S ribosomal protein P0; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.969 |
| APE_0510.1 | rps8e | APE_0510.1 | APE_0789 | Putative GTP-binding protein. | 30S ribosomal protein S8e. | 0.999 |
| APE_0510.1 | rtcA | APE_0510.1 | APE_0511.1 | Putative GTP-binding protein. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.779 |
| APE_0514 | APE_0510.1 | APE_0514 | APE_0510.1 | RNA (cytosine-C(5)-)-methyltransferase. | Putative GTP-binding protein. | 0.851 |
| APE_0514 | APE_0516.1 | APE_0514 | APE_0516.1 | RNA (cytosine-C(5)-)-methyltransferase. | Hypothetical protein; Belongs to the UPF0113 family. | 0.966 |
| APE_0514 | APE_1443.1 | APE_0514 | APE_1443.1 | RNA (cytosine-C(5)-)-methyltransferase. | Conserved hypothetical protein; Probably involved in the biogenesis of the ribosome. | 0.756 |
| APE_0514 | APE_2199.1 | APE_0514 | APE_2199.1 | RNA (cytosine-C(5)-)-methyltransferase. | snoRNA binding protein; aNOP56. | 0.735 |
| APE_0514 | rpl30p | APE_0514 | APE_0345.1 | RNA (cytosine-C(5)-)-methyltransferase. | 50S ribosomal protein L30P. | 0.696 |
| APE_0514 | rpl7ae | APE_0514 | APE_1818 | RNA (cytosine-C(5)-)-methyltransferase. | 50S ribosomal protein L7Ae/small nucleolar RNP protein Snu13p/Nhp2P; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.561 |
| APE_0514 | rplP0 | APE_0514 | APE_2171.1 | RNA (cytosine-C(5)-)-methyltransferase. | 50S ribosomal protein P0; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.759 |
| APE_0514 | rps8e | APE_0514 | APE_0789 | RNA (cytosine-C(5)-)-methyltransferase. | 30S ribosomal protein S8e. | 0.776 |
| APE_0514 | rtcA | APE_0514 | APE_0511.1 | RNA (cytosine-C(5)-)-methyltransferase. | RNA 3'-terminal phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.682 |
| APE_0516.1 | APE_0510.1 | APE_0516.1 | APE_0510.1 | Hypothetical protein; Belongs to the UPF0113 family. | Putative GTP-binding protein. | 0.969 |
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