Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APE_0603 | gcvPA | APE_0603 | APE_2124.1 | Molybdopterin converting factor; MoaD-MoaE fusion protein. | Glycine cleavage system P-protein subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.769 |
APE_0603 | gcvPB | APE_0603 | APE_2121.1 | Molybdopterin converting factor; MoaD-MoaE fusion protein. | Glycine cleavage system P-protein subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.483 |
APE_0603 | gcvT | APE_0603 | APE_1695.1 | Molybdopterin converting factor; MoaD-MoaE fusion protein. | Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.409 |
APE_0807.1 | APE_0935 | APE_0807.1 | APE_0935 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Hypothetical protein. | 0.928 |
APE_0807.1 | gcvH | APE_0807.1 | APE_0951.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.838 |
APE_0807.1 | gcvPA | APE_0807.1 | APE_2124.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glycine cleavage system P-protein subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.828 |
APE_0807.1 | gcvPB | APE_0807.1 | APE_2121.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glycine cleavage system P-protein subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.836 |
APE_0807.1 | gcvT | APE_0807.1 | APE_1695.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.866 |
APE_0807.1 | gdhA | APE_0807.1 | APE_1386.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | NADP-dependent glutamate dehydrogenase; GDH; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.938 |
APE_0807.1 | glnA | APE_0807.1 | APE_2142.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glutamine synthetase; Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.928 |
APE_0807.1 | pdhD | APE_0807.1 | APE_1669.1 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Dihydrolipoyl dehydrogenase; Glycine cleavage system L protein; pyruvate dehydrogenase complex, E3 component. | 0.838 |
APE_0935 | APE_0807.1 | APE_0935 | APE_0807.1 | Hypothetical protein. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.928 |
APE_0935 | gcvH | APE_0935 | APE_0951.1 | Hypothetical protein. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.828 |
APE_0935 | gcvPA | APE_0935 | APE_2124.1 | Hypothetical protein. | Glycine cleavage system P-protein subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.805 |
APE_0935 | gcvPB | APE_0935 | APE_2121.1 | Hypothetical protein. | Glycine cleavage system P-protein subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.805 |
APE_0935 | gcvT | APE_0935 | APE_1695.1 | Hypothetical protein. | Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.813 |
APE_0935 | gdhA | APE_0935 | APE_1386.1 | Hypothetical protein. | NADP-dependent glutamate dehydrogenase; GDH; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.969 |
APE_0935 | glnA | APE_0935 | APE_2142.1 | Hypothetical protein. | Glutamine synthetase; Glutamate--ammonia ligase; Belongs to the glutamine synthetase family. | 0.964 |
APE_0935 | pdhD | APE_0935 | APE_1669.1 | Hypothetical protein. | Dihydrolipoyl dehydrogenase; Glycine cleavage system L protein; pyruvate dehydrogenase complex, E3 component. | 0.852 |
gcvH | APE_0807.1 | APE_0951.1 | APE_0807.1 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.838 |
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