Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BH0453 | BH0459 | gene:10726306 | gene:10726312 | Lantibiotic cytolysin precursor. | BH0459; unknown. | 0.760 |
BH0453 | BH0460 | gene:10726306 | gene:10726313 | Lantibiotic cytolysin precursor. | Transcriptional regulator. | 0.760 |
BH0453 | hemH | gene:10726306 | gene:10727097 | Lantibiotic cytolysin precursor. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.760 |
BH0453 | licT | gene:10726306 | gene:10726150 | Lantibiotic cytolysin precursor. | Transcription antiterminator (BigG family); BH0297. | 0.760 |
BH0459 | BH0453 | gene:10726312 | gene:10726306 | BH0459; unknown. | Lantibiotic cytolysin precursor. | 0.760 |
BH0459 | BH0460 | gene:10726312 | gene:10726313 | BH0459; unknown. | Transcriptional regulator. | 0.947 |
BH0459 | hemH | gene:10726312 | gene:10727097 | BH0459; unknown. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.766 |
BH0459 | licT | gene:10726312 | gene:10726150 | BH0459; unknown. | Transcription antiterminator (BigG family); BH0297. | 0.766 |
BH0460 | BH0453 | gene:10726313 | gene:10726306 | Transcriptional regulator. | Lantibiotic cytolysin precursor. | 0.760 |
BH0460 | BH0459 | gene:10726313 | gene:10726312 | Transcriptional regulator. | BH0459; unknown. | 0.947 |
BH0460 | hemH | gene:10726313 | gene:10727097 | Transcriptional regulator. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.766 |
BH0460 | licT | gene:10726313 | gene:10726150 | Transcriptional regulator. | Transcription antiterminator (BigG family); BH0297. | 0.766 |
BH3293 | BH3825 | gene:10729205 | gene:10729738 | Heme-degrading monooxygenase; Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the biliverdin in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily. | Putative heme-dependent peroxidase BH3825; May function as heme-dependent peroxidase. | 0.924 |
BH3293 | BH3883 | gene:10729205 | gene:10729796 | Heme-degrading monooxygenase; Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the biliverdin in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily. | BH3883; unknown conserved protein in B. subtilis. | 0.936 |
BH3293 | ctaB | gene:10729205 | gene:10728514 | Heme-degrading monooxygenase; Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the biliverdin in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. | 0.900 |
BH3293 | hemH | gene:10729205 | gene:10727097 | Heme-degrading monooxygenase; Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the biliverdin in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.916 |
BH3825 | BH3293 | gene:10729738 | gene:10729205 | Putative heme-dependent peroxidase BH3825; May function as heme-dependent peroxidase. | Heme-degrading monooxygenase; Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the biliverdin in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily. | 0.924 |
BH3825 | BH3883 | gene:10729738 | gene:10729796 | Putative heme-dependent peroxidase BH3825; May function as heme-dependent peroxidase. | BH3883; unknown conserved protein in B. subtilis. | 0.908 |
BH3825 | ctaB | gene:10729738 | gene:10728514 | Putative heme-dependent peroxidase BH3825; May function as heme-dependent peroxidase. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. | 0.914 |
BH3825 | hemE | gene:10729738 | gene:10727096 | Putative heme-dependent peroxidase BH3825; May function as heme-dependent peroxidase. | Uroporphyrinogen III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.448 |
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