Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| sigF | spoIIAA | gene:10727436 | gene:10727434 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor antagonist (stage II sporulation protein AA); BH1536; Belongs to the anti-sigma-factor antagonist family. | 0.943 |
| sigF | spoIIAB | gene:10727436 | gene:10727435 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor (stage II sporulation protein AB); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.989 |
| sigF | spoIIGA | gene:10727436 | gene:10728455 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Protease (processing of pro-sigma-E to active sigma-E); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.680 |
| sigF | spoIIID | gene:10727436 | gene:10729653 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator of sigma-E- and sigma-K-dependent; BH3740. | 0.747 |
| sigF | spoIIR | gene:10727436 | gene:10729686 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein R; BH3773; required for processing of pro-sigma-E. | 0.749 |
| sigF | spoVAC | gene:10727436 | gene:10727437 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AC; BH1539. | 0.870 |
| sigF | spoVAD | gene:10727436 | gene:10727438 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AD; BH1540. | 0.857 |
| sigF | spoVAE | gene:10727436 | gene:10727439 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AE; BH1541; divided. | 0.855 |
| sigF | spoVAF | gene:10727436 | gene:10727441 | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AF; BH1543. | 0.852 |
| sigG | spoIIAA | gene:10728452 | gene:10727434 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor antagonist (stage II sporulation protein AA); BH1536; Belongs to the anti-sigma-factor antagonist family. | 0.487 |
| sigG | spoIIAB | gene:10728452 | gene:10727435 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor (stage II sporulation protein AB); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.849 |
| sigG | spoIIGA | gene:10728452 | gene:10728455 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Protease (processing of pro-sigma-E to active sigma-E); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.770 |
| sigG | spoIIID | gene:10728452 | gene:10729653 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator of sigma-E- and sigma-K-dependent; BH3740. | 0.814 |
| sigG | spoIIR | gene:10728452 | gene:10729686 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein R; BH3773; required for processing of pro-sigma-E. | 0.803 |
| sigG | spoVAC | gene:10728452 | gene:10727437 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AC; BH1539. | 0.772 |
| sigG | spoVAD | gene:10728452 | gene:10727438 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AD; BH1540. | 0.782 |
| sigG | spoVAE | gene:10728452 | gene:10727439 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AE; BH1541; divided. | 0.770 |
| sigG | spoVAF | gene:10728452 | gene:10727441 | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AF; BH1543. | 0.750 |
| spoIIAA | sigF | gene:10727434 | gene:10727436 | Anti-sigma F factor antagonist (stage II sporulation protein AA); BH1536; Belongs to the anti-sigma-factor antagonist family. | RNA polymerase sigma-F factor (stage II sporulation protein AC); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.943 |
| spoIIAA | sigG | gene:10727434 | gene:10728452 | Anti-sigma F factor antagonist (stage II sporulation protein AA); BH1536; Belongs to the anti-sigma-factor antagonist family. | RNA polymerase sporulation forespore-specific (late) sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.487 |
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