STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0111Conserved hypothetical protein (fragment); Weakly similar to the N-terminal regions of Streptomyces avermitilis hypothetical protein SWALL:Q82F88 (EMBL:AP005038) (164 aa) fasta scores: E(): 2.1, 33.33% id in 96 aa, and Streptomyces coelicolor putative transcriptional regulator SC4C6.04 SWALL:Q9XAN6 (EMBL:AL939128) (204 aa) fasta scores: E(): 5.2, 35% id in 80 aa. CDS contains a frameshift after codon 77. (370 aa)    
Predicted Functional Partners:
BPSS1065
Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 5.6e-72, 54.97% id in 342 aa, and to Bacteriophage phi CTX Pseudomonas aeruginosa phage phi ctx SWALL:Q9ZXM3 (EMBL:AB008550) (338 aa) fasta scores: E(): 1.7e-81, 64.2% id in 338 aa, and to Ralstonia solanacearum probable bacteriophage protein rsc1937 or rs03506 SWALL:Q8XY26 (EMBL:AL646067) (338 aa) fasta scores: E(): 2.6e-81, 62.9% id in 337 aa.
 
  
 0.969
BPSL0170
Similar to bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 5.7e-70, 55.84% id in 342 aa, and to bacteriophage phi CTX protein SWALL:Q9ZXM3 (EMBL:AB008550) (338 aa) fasta scores: E(): 1.6e-83, 64.39% id in 337 aa. Similar to BPSS1065, 97.626% identity (97.917% ungapped) in 337 aa overlap.
 
  
 0.921
BPSL0159
Similar to bacteriophage P2 tail completion protein S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 9.2e-13, 36.84% id in 152 aa, and to Xanthomonas axonopodis pv. citri str. 306 phage-related tail protein S SWALL:AAM37500 (EMBL:AE011905) (148 aa) fasta scores: E(): 4e-25, 50.99% id in 151 aa. Similar to BPSS1075, 94.194% identity (94.194% ungapped) in 155 aa overlap.
 
    0.913
BPSL0160
Similar to bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 9.4e-13, 37.87% id in 132 aa, and to Ralstonia solanacearum probable tail completion-like protein rsc1929 or rs03499 SWALL:Q8XY34 (EMBL:AL646067) (144 aa) fasta scores: E(): 2.2e-19, 44.92% id in 138 aa. Similar to BPSS1074, 97.101% identity (97.101% ungapped) in 138 aa overlap.
 
    0.913
BPSL0168
Similar to bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 2.8e-15, 42.25% id in 142 aa, and to Ralstonia solanacearum probable bacteriophage protein rsc1935 or rs03504 SWALL:Q8XY28 (EMBL:AL646067) (159 aa) fasta scores: E(): 2.8e-26, 55.34% id in 159 aa. Similar to BPSS1067, 98.113% identity (98.113% ungapped) in 159 aa overlap.
 
    0.913
BPSL0171
Similar to bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 3e-24, 43.44% id in 290 aa, and to bacteriophage phi CTX protein SWALL:Q9ZXM4 (EMBL:AB008550) (273 aa) fasta scores: E(): 9e-31, 44.71% id in 284 aa. Similar to BPSS1064, 98.885% identity (98.885% ungapped) in 269 aa overlap.
 
    0.913
BPSL0172
Similar to bacteriophage P2 terminase, ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 4.2e-136, 56.15% id in 593 aa, and to bacteriophage phi CTX protein SWALL:Q9ZXM5 (EMBL:AB008550) (594 aa) fasta scores: E(): 5.3e-160, 67.19% id in 564 aa. Simlar to BPSS1063, 98.980% identity (98.980% ungapped) in 588 aa overlap.
 
    0.913
BPSS1063
Similar to Bacteriophage P2 terminase, ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 5.2e-136, 56.32% id in 593 aa, and to Bacteriophage phi CTX Pseudomonas aeruginosa phage phi ctx SWALL:Q9ZXM5 (EMBL:AB008550) (594 aa) fasta scores: E(): 7.1e-160, 67.37% id in 564 aa, and to Xanthomonas campestris phage-related terminase P or xcc2970 SWALL:AAM42242 (EMBL:AE012411) (594 aa) fasta scores: E(): 1.3e-152, 62.52% id in 579 aa, and to Xanthomonas axonopodis phage-related terminase P or xac2642 SWALL:AAM37489 (EMBL:AE011904) (594 aa) fasta scores: E(): 5e-152, 62 [...]
 
    0.913
BPSS1064
Putative bacteriophage protein; Similar to Bacteriophage phi CTX Pseudomonas aeruginosa phage phi ctx SWALL:Q9ZXM4 (EMBL:AB008550) (273 aa) fasta scores: E(): 7.2e-31, 45.07% id in 284 aa, and to Salmonella typhi putative capsid scaffolding protein sty3676 SWALL:Q8Z357 (EMBL:AL627279) (277 aa) fasta scores: E(): 6.3e-30, 46.15% id in 286 aa, and to Ralstonia solanacearum probable bacteriophage protein rsc1938 or rs03507 SWALL:Q8XY25 (EMBL:AL646067) (279 aa) fasta scores: E(): 6.3e-30, 48.45% id in 291 aa.
 
    0.913
BPSS1067
Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 2.5e-15, 42.25% id in 142 aa, and to Ralstonia solanacearum probable bacteriophage protein rsc1935 or rs03504 SWALL:Q8XY28 (EMBL:AL646067) (159 aa) fasta scores: E(): 2.3e-26, 55.34% id in 159 aa, and to Xanthomonas campestris phage-related capsid completion protein l or xcc2974 SWALL:AAM42246 (EMBL:AE012412) (155 aa) fasta scores: E(): 1.4e-20, 47.79% id in 159 aa.
 
    0.913
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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