STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0353Putative exported protein; Similar to Ralstonia solanacearum probable carboxypeptidase protein rsc1003 or rs04289 SWALL:Q8Y0P0 (EMBL:AL646062) (543 aa) fasta scores: E(): 1e-43, 39.22% id in 543 aa, and to Deinococcus radiodurans carboxypeptidase-related protein dr0964 SWALL:Q9RVQ8 (EMBL:AE001948) (500 aa) fasta scores: E(): 2.7e-31, 33.75% id in 480 aa. CDS contains an extended N-terminal region is comparison to orthologues. (563 aa)    
Predicted Functional Partners:
BPSL0354
Putative exported protein; Poor database matches. C-terminus is similar to the C-terminal region of Ralstonia solanacearum putative calcium binding signal peptide protein rsc3104 or rs00557 SWALL:Q8XUT1 (EMBL:AL646073) (194 aa) fasta scores: E(): 0.077, 39.47% id in 76 aa.
       0.583
BPSS0543
Similar to Acetobacter diazotrophicus levansucrase precursor LsdA SWALL:SACB_ACEDI (SWALL:Q43998) (584 aa) fasta scores: E(): 4.8e-129, 66.8% id in 476 aa, and to Arthrobacter sp. K-1 beta-fructofuranosidase Bff SWALL:Q8VW87 (EMBL:AB062134) (578 aa) fasta scores: E(): 7.6e-109, 56.27% id in 526 aa; Belongs to the glycosyl hydrolase 68 family.
  
   
 0.481
BPSL0355
Similar to Ralstonia solanacearum putative ATP-sensitive inward rectifier potassium channel related transmembrane protein rsc0450 or rs04452 SWALL:Q8Y286 (EMBL:AL646059) (307 aa) fasta scores: E(): 1.6e-79, 71.08% id in 294 aa, and to Anabaena sp. hypothetical protein all0954 SWALL:Q8YY97 (EMBL:AP003584) (303 aa) fasta scores: E(): 1e-45, 43% id in 293 aa.
       0.414
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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