STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0696Putative periplasmic cytochrome c containing protein; Similar to Acetobacter europaeus cytochrome c precursor AldF SWALL:O30327 (EMBL:Y08696) (444 aa) fasta scores: E(): 1.9e-44, 36.43% id in 398 aa, and to Pseudomonas aeruginosa probable c-type cytochrome pa4619 SWALL:Q9HVH2 (EMBL:AE004876) (415 aa) fasta scores: E(): 2.9e-55, 39.57% id in 427 aa, and to Pseudomonas aeruginosa probable cytochrome c pa4571 SWALL:Q9HVL3 (EMBL:AE004870) (675 aa) fasta scores: E(): 1.9e-49, 38.69% id in 398 aa (432 aa)    
Predicted Functional Partners:
BPSL0697
Putative periplasmic cytochrome c protein; Similar to Thiobacillus ferrooxidans cytochrome c-552 precursor Cyc1 SWALL:C552_THIFE (SWALL:P74917) (230 aa) fasta scores: E(): 3.5e-07, 26.63% id in 229 aa, and to Pseudomonas aeruginosa probable cytochrome c pa2482 SWALL:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 3.4e-15, 37.05% id in 170 aa, and to Ralstonia solanacearum putative cytochrome c signal peptide protein rsc0197 or rs00629 SWALL:Q8Y2Y4 (EMBL:AL646058) (206 aa) fasta scores: E(): 6.3e-14, 37.71% id in 175 aa
   
 0.946
BPSL1256
Putative cytochrome c; Similar to Pseudomonas aeruginosa probable cytochrome c pa2482 SWALL:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 1e-14, 32.71% id in 214 aa, and to Ralstonia solanacearum putative cytochrome c signal peptide protein rsc0197 or rs00629 SWALL:Q8Y2Y4 (EMBL:AL646058) (206 aa) fasta scores: E(): 3.4e-14, 34.8% id in 204 aa
   
 0.744
BPSL2364
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0971 or rs02303 SWALL:Q8XR88 (EMBL:AL646082) (406 aa) fasta scores: E(): 3.5e-25, 32.36% id in 411 aa, and to Rhizobium meliloti hypothetical protein ra0687 or sma1259 SWALL:Q92Z23 (EMBL:AE007256) (452 aa) fasta scores: E(): 1.2e-18, 30.42% id in 447 aa
  
 
 0.555
BPSS1729
Putative cytochrome C; Probable gene remnant. Similar to the N-terminal regions of Xylella fastidiosa IS1327 transposase Tnp SWALL:Q87BW4 (EMBL:AE012558) (188 aa) fasta scores: E(): 4.3e-05, 40.22% id in 87 aa, and to Pantoea agglomerans IS1327 containing a transposase TnpA SWALL:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 0.00022, 39.08% id in 87 aa
 
 
 
0.544
rhlE1
ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA
       0.536
BPSL1261
Putative cytochrome c related protein; Similar in its C-terminal region to Pseudomonas aeruginosa cytochrome c4 precursor pa5490 SWALL:CYC4_PSEAE (SWALL:P00106) (201 aa) fasta scores: E(): 3.8e-12, 34.09% id in 176 aa, and to Rhizobium meliloti putative cytochrome c class I protein, probably cytochrome c4 CycA or rb0945 or smb21367 SWALL:Q92UY9 (EMBL:AL603645) (374 aa) fasta scores: E(): 4.5e-08, 31.01% id in 187 aa. N-terminal region presents possible hydrophobic membrane spanning domains
   
 0.529
BPSS0969
Putative molybdopterin oxidoreductase; Similar to Ralstonia solanacearum putative formate dehydrogenase oxidoreductase protein rsp1048 or rs06130 SWALL:Q8XR20 (EMBL:AL646082) (779 aa) fasta scores: E(): 9e-208, 65.21% id in 756 aa, and to Ralstonia solanacearum putative formate dehydrogenase oxidoreductase protein rsp0070 or rs06105 SWALL:Q8XTN6 (EMBL:AL646076) (764 aa) fasta scores: E(): 4e-206, 64.81% id in 756 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
 
 
 0.520
BPSL2351
Putative membrane protein; Similar to Ralstonia solanacearum probable nitric oxide reductase rsp1505 or rs03036 SWALL:Q8XPY1 (EMBL:AL646085) (756 aa) fasta scores: E(): 2.4e-213, 70.34% id in 762 aa. C-terminal region is similar to Pseudomonas aeruginosa nitric-oxide reductase subunit b norb or pa0524 SWALL:NORB_PSEAE (SWALL:Q59647) (466 aa) fasta scores: E(): 5.7e-22, 28.75% id in 480 aa
   
 
 0.510
BPSS1241
Putative bifunctional reductase; Possible fusion protein. N-terminal region is similar to Synechococcus sp. nitrate reductase NarB SWALL:NARB_SYNP7 (SWALL:P39458) (729 aa) fasta scores: E(): 9.4e-73, 43.09% id in 724 aa. C-terminal region is similar to Escherichia coli sulfite reductase [NADPH] flavoprotein alpha-component CysJ SWALL:CYSJ_ECOLI (SWALL:P38038) (598 aa) fasta scores: E(): 8.1e-70, 39.13% id in 598 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
  
 
 0.506
fdoG
Similar to Escherichia coli formate dehydrogenase-O, major subunit Fdog or b3894 SWALL:FDOG_ECOLI (SWALL:P32176) (1016 aa) fasta scores: E(): 0, 66.6% id in 1021 aa, and to Shigella flexneri formate dehydrogenase-O, major subunit Fdog or sf3970 SWALL:AAN45405 (EMBL:AE015404) (1016 aa) fasta scores: E(): 0, 66.69% id in 1021 aa. This CDS contains an in-frame opal codon, UGA, at position 197. This opal codon encodes selenocysteine, which forms the active-site of the protein
  
 
 0.489
Your Current Organism:
Burkholderia pseudomallei K96243
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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