STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0696Putative periplasmic cytochrome c containing protein; Similar to Acetobacter europaeus cytochrome c precursor AldF SWALL:O30327 (EMBL:Y08696) (444 aa) fasta scores: E(): 1.9e-44, 36.43% id in 398 aa, and to Pseudomonas aeruginosa probable c-type cytochrome pa4619 SWALL:Q9HVH2 (EMBL:AE004876) (415 aa) fasta scores: E(): 2.9e-55, 39.57% id in 427 aa, and to Pseudomonas aeruginosa probable cytochrome c pa4571 SWALL:Q9HVL3 (EMBL:AE004870) (675 aa) fasta scores: E(): 1.9e-49, 38.69% id in 398 aa. (432 aa)    
Predicted Functional Partners:
BPSL0697
Putative periplasmic cytochrome c protein; Similar to Thiobacillus ferrooxidans cytochrome c-552 precursor Cyc1 SWALL:C552_THIFE (SWALL:P74917) (230 aa) fasta scores: E(): 3.5e-07, 26.63% id in 229 aa, and to Pseudomonas aeruginosa probable cytochrome c pa2482 SWALL:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 3.4e-15, 37.05% id in 170 aa, and to Ralstonia solanacearum putative cytochrome c signal peptide protein rsc0197 or rs00629 SWALL:Q8Y2Y4 (EMBL:AL646058) (206 aa) fasta scores: E(): 6.3e-14, 37.71% id in 175 aa.
  
 0.925
BPSL0723
Similar to Bacillus firmus cytochrome c oxidase polypeptide II precursor ctaC SWALL:COX2_BACFI (SWALL:Q04441) (342 aa) fasta scores: E(): 3e-28, 34.07% id in 314 aa, and to Rhizobium loti cytochrome oxidase subunit II mll9631 SWALL:Q98P34 (EMBL:AP003017) (330 aa) fasta scores: E(): 1.6e-39, 43.77% id in 297 aa, and to Rhizobium meliloti putative cytochrome c oxidase chain II protein rb0946 or smb21368 SWALL:Q92UY8 (EMBL:AL603645) (327 aa) fasta scores: E(): 2e-35, 40.36% id in 327 aa; Possible alternative start at codon 70.
  
 
 0.911
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.883
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.849
BPSL2364
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0971 or rs02303 SWALL:Q8XR88 (EMBL:AL646082) (406 aa) fasta scores: E(): 3.5e-25, 32.36% id in 411 aa, and to Rhizobium meliloti hypothetical protein ra0687 or sma1259 SWALL:Q92Z23 (EMBL:AE007256) (452 aa) fasta scores: E(): 1.2e-18, 30.42% id in 447 aa.
  
 
 0.789
BPSL2351
Putative membrane protein; Similar to Ralstonia solanacearum probable nitric oxide reductase rsp1505 or rs03036 SWALL:Q8XPY1 (EMBL:AL646085) (756 aa) fasta scores: E(): 2.4e-213, 70.34% id in 762 aa. C-terminal region is similar to Pseudomonas aeruginosa nitric-oxide reductase subunit b norb or pa0524 SWALL:NORB_PSEAE (SWALL:Q59647) (466 aa) fasta scores: E(): 5.7e-22, 28.75% id in 480 aa.
  
 
 0.744
BPSS1729
Putative transposase (fragment); Probable gene remnant. Similar to the N-terminal regions of Xylella fastidiosa IS1327 transposase Tnp SWALL:Q87BW4 (EMBL:AE012558) (188 aa) fasta scores: E(): 4.3e-05, 40.22% id in 87 aa, and to Pantoea agglomerans IS1327 containing a transposase TnpA SWALL:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 0.00022, 39.08% id in 87 aa.
 
 
 
0.739
BPSL1256
Similar to Pseudomonas aeruginosa probable cytochrome c pa2482 SWALL:Q9I100 (EMBL:AE004676) (217 aa) fasta scores: E(): 1e-14, 32.71% id in 214 aa, and to Ralstonia solanacearum putative cytochrome c signal peptide protein rsc0197 or rs00629 SWALL:Q8Y2Y4 (EMBL:AL646058) (206 aa) fasta scores: E(): 3.4e-14, 34.8% id in 204 aa.
  
 0.727
BPSL2413
Putative exported protein; Similar to Vibrio cholerae hypothetical protein vca0037 SWALL:Q9KNC8 (EMBL:AE004347) (150 aa) fasta scores: E(): 1.8e-06, 29.85% id in 134 aa, and to Caulobacter crescentus hypothetical protein cc3502 SWALL:Q9A2Q4 (EMBL:AE006008) (151 aa) fasta scores: E(): 1.8e-06, 31.94% id in 144 aa.
  
 
 0.709
BPSS0975
Conserved hypothetical protein; Similar to Pantoea citrea 2-keto-gluconate dehydrogenase subunit KdgA SWALL:Q9XCR1 (EMBL:AF131202) (189 aa) fasta scores: E(): 0.025, 31.28% id in 163 aa, and to Ralstonia solanacearum putative transmembrane dehydrogenase rsc0770 or rs05084 SWALL:Q8Y1C0 (EMBL:AL646061) (163 aa) fasta scores: E(): 2.1e-31, 59.39% id in 165 aa.
 
 
   0.689
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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