STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL0748Hypothetical protein; No significant database matches to the full length CDS. N-terminal region is similar to Escherichia coli O157:H7 hypothetical protein z0325 or ecs0290 SWALL:Q8X7K6 (EMBL:AE005203) (138 aa) fasta scores: E(): 7.4e-11, 37.98% id in 129 aa, and the C-terminal region is similar to Escherichia coli O157:H7 hypothetical protein z0326 or ecs0291 SWALL:Q8X7K5 (EMBL:AE005203) (205 aa) fasta scores: E(): 7e-12, 31.25% id in 192 aa. CDS is a possible fusion protein. (352 aa)    
Predicted Functional Partners:
BPSL0749
Hypothetical protein; Similar to Escherichia coli O157:H7 hypothetical protein z0327 or ecs0292 SWALL:Q8X7K4 (EMBL:AE005203) (152 aa) fasta scores: E(): 6.8e-05, 22.44% id in 147 aa.
 
     0.954
BPSL0750
Hypothetical protein; C-terminal region is similar to Escherichia coli O157:H7 hypothetical protein z0331 or ecs0295 SWALL:Q8X7J2 (EMBL:AE005203) (188 aa) fasta scores: E(): 4.3e-09, 27.52% id in 178 aa.
 
     0.954
wbiD
Previously sequenced as Burkholderia pseudomallei putative O-antigen methyl transferase WbiD SWALL:O69125 (EMBL:AF064070) (574 aa) fasta scores: E(): 0, 99.65% id in 574 aa. Also similar to Burkholderia mallei putative O-antigen methyl transferase WbiD SWALL:Q9AEV1 (EMBL:AY028370) (574 aa) fasta scores: E(): 0, 99.47% id in 574 aa and to Rhizobium loti putative O-antigen methyl transferase mlr7341 SWALL:Q986I5 (EMBL:AP003011) (664 aa) fasta scores: E(): 3.9e-75, 39.27% id in 555 aa.
  
     0.475
BPSS2046
Similar to Rhizobium hedysari putative transposase SWALL:O30982 (EMBL:AF023675) (250 aa) fasta scores: E(): 3.9e-32, 44.29% id in 228 aa, and to Pantoea agglomerans IS1327 containing a transposase TnpA SWALL:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 8.6e-23, 33.33% id in 228 aa.
  
     0.442
BPSS2049
Similar to Rhizobium hedysari putative transposase SWALL:O30982 (EMBL:AF023675) (250 aa) fasta scores: E(): 7.8e-32, 44.29% id in 228 aa, and to Pantoea agglomerans IS1327 containing a transposase TnpA SWALL:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 5e-22, 32.89% id in 228 aa.
  
     0.440
BPSS1774
Hypothetical protein; No significant database matches.
  
     0.427
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.