STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL1308Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0711 or rs01738 SWALL:Q8XRX0 (EMBL:AL646080) (277 aa) fasta scores: E(): 3.6e-60, 58.42% id in 267 aa, and to Rhizobium loti hypothetical protein mll0509 SWALL:Q98MN1 (EMBL:AP002995) (295 aa) fasta scores: E(): 2.1e-21, 35.61% id in 278 aa. Note: This CDS is shorter in its N-terminal region than most of its database matches. (265 aa)    
Predicted Functional Partners:
BPSL1307
Similar to Ralstonia solanacearum hypothetical protein rsp0712 or rs01737 SWALL:Q8XRW9 (EMBL:AL646080) (200 aa) fasta scores: E(): 1.4e-48, 57.5% id in 200 aa, and to Rhizobium loti hypothetical protein mll4476 SWALL:Q98DZ5 (EMBL:AP003004) (209 aa) fasta scores: E(): 1.5e-16, 30.76% id in 195 aa.
 
     0.920
BPSS0717
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0982 or rs04310 SWALL:Q8Y0R1 (EMBL:AL646062) (429 aa) fasta scores: E(): 1.4e-83, 53.42% id in 423 aa, and to Rhizobium meliloti putative two-component sensor histidine kinase protein rb1162 or smb20868 SWALL:Q92UG9 (EMBL:AL603646) (1229 aa) fasta scores: E(): 1e-09, 26.43% id in 435 aa.
  
     0.457
BPSS1034
Putative membrane protein; Similar to Rhizobium loti hypothetical protein Mll1752 SWALL:Q98JW1 (EMBL:AP002998) (178 aa) fasta scores: E(): 2.7e-22, 42.44% id in 172 aa, and to Rhizobium loti nickel-cobalt-cadmium resistance protein mlr6490 SWALL:Q989C1 (EMBL:AP003009) (176 aa) fasta scores: E(): 3e-06, 30.95% id in 168 aa, and to Sulfolobus tokodaii hypothetical protein St1187 SWALL:Q972E1 (EMBL:AP000985) (199 aa) fasta scores: E(): 7.1e-06, 29.65% id in 145 aa.
  
     0.442
BPSL0342
Putative membrane protein; Similar to Ralstonia solanacearum hypothetical transmembrane protein rsp1375 or rs02083 SWALL:Q8XQB1 (EMBL:AL646084) (100 aa) fasta scores: E(): 1.8e-24, 73.46% id in 98 aa, and to Rhizobium loti hypothetical protein msl2426 SWALL:Q98IF5 (EMBL:AP002999) (99 aa) fasta scores: E(): 7.8e-23, 69.69% id in 99 aa.
  
     0.441
BPSL2191
Similar to Ralstonia solanacearum putative 2-haloalkanoic acid dehalogenase protein rsc1362 or rs04644 SWALL:Q8XZN3 (EMBL:AL646064) (233 aa) fasta scores: E(): 2.6e-49, 61.94% id in 226 aa, and to Pseudomonas sp. 2-haloalkanoic acid dehalogenase SWALL:HAD_PSESP (SWALL:Q53464) (232 aa) fasta scores: E(): 1.1e-30, 44.06% id in 236 aa.
  
     0.419
BPSL2047
Conserved hypothetical protein; Similar to the N-terminal region of Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 8.9e-16, 38.02% id in 760 aa.
  
     0.411
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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