STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSL2047Conserved hypothetical protein; Similar to the N-terminal region of Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 8.9e-16, 38.02% id in 760 aa. (802 aa)    
Predicted Functional Partners:
BPSL2046
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative VGR-related protein rsp0738 or rs01970 SWALL:Q8XRU3 (EMBL:AL646080) (898 aa) fasta scores: E(): 4.6e-55, 40.98% id in 893 aa, and to Pseudomonas aeruginosa hypothetical protein pa5090 SWALL:Q9HU93 (EMBL:AE004921) (790 aa) fasta scores: E(): 2.3e-15, 25.98% id in 812 aa.
 
  
 0.906
BPSL2050
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative VGR-related protein rsp0750 or rs01958 SWALL:Q8XRT1 (EMBL:AL646080) (918 aa) fasta scores: E(): 1.7e-37, 30.16% id in 968 aa, and to Pseudomonas aeruginosa hypothetical protein pa0262 SWALL:Q9I6M7 (EMBL:AE004464) (1019 aa) fasta scores: E(): 3.9e-07, 26.49% id in 902 aa. Note: Also similar to BPSL2041 (947 aa) fasta scores: E(): 1.1e-34, 30.489% identity in 961 aa overlap.
 
  
 0.905
BPSL2041
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium VrgS protein SWALL:Q93IR3 (EMBL:AJ320483) (729 aa) fasta scores: E(): 1.8e-11, 26.08% id in 552 aa, and to Ralstonia solanacearum putative VGR-related protein rsp0750 or rs01958 SWALL:Q8XRT1 (EMBL:AL646080) (918 aa) fasta scores: E(): 1.4e-57, 40.27% id in 961 aa. Note: Also similar to BPSL2050 (933 aa) fasta scores: E(): 3.5e-32, 30.665% identity in 962 aa overlap.
 
  
 0.855
BPSS1496
Similar to Vibrio cholerae hypothetical protein Vca0107 SWALL:Q9KN58 (EMBL:AE004353) (168 aa) fasta scores: E(): 2.3e-28, 55.9% id in 161 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1657 SWALL:Q9I368 (EMBL:AE004593) (168 aa) fasta scores: E(): 3.5e-28, 51.55% id in 161 aa, and to Yersinia pestis hypothetical protein Ypo3707 SWALL:Q8ZAT3 (EMBL:AJ414158) (165 aa) fasta scores: E(): 2.6e-24, 47.59% id in 166 aa.
  
 
 0.836
BPSL2048
Conserved hypothetical protein; Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 2.1e-11, 35.92% id in 167 aa.
       0.782
BPSL2048A
Conserved hypothetical protein; Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 4.1e-08, 31.88% id in 138 aa.
       0.782
BPSS1213
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative VGR-related protein rsc3222 or rs02439 SWALL:Q8XUG6 (EMBL:AL646074) (547 aa) fasta scores: E(): 7.4e-54, 45.28% id in 382 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0262 SWALL:Q9I6M7 (EMBL:AE004464) (1019 aa) fasta scores: E(): 4.1e-43, 31.13% id in 893 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1511 SWALL:Q9I3K1 (EMBL:AE004579) (842 aa) fasta scores: E(): 7.3e-39, 30.09% id in 864 aa.
 
  
 0.769
BPSS1911
Putative membrane protein; No significant database matches.
  
     0.769
BPSL2901
Putative lipoprotein; Very low similarity to Pseudomonas aeruginosa hypothetical protein pa4384 SWALL:Q9HW18 (EMBL:AE004854) (228 aa) fasta scores: E(): 3.6e-05, 31.84% id in 157 aa.
  
     0.768
BPSS0078
Conserved hypothetical protein; Similar to Ralstonia solanacearum putative VGR-related protein rsp0518 or rs06151 SWALL:Q8XSF8 (EMBL:AL646079) (908 aa) fasta scores: E(): 1.1e-90, 41.55% id in 900 aa, and to Escherichia coli VgrE protein SWALL:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 0.00017, 25% id in 532 aa.
 
  
 0.768
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.