STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
araGL-arabinose transport system, ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family. (510 aa)    
Predicted Functional Partners:
araH
Similar to Escherichia coli L-arabinose transport system permease protein AraH or b1898/b1899 SWALL:ARAH_ECOLI (SWALL:P08532) (329 aa) fasta scores: E(): 1.1e-64, 57.92% id in 309 aa, and to Ralstonia solanacearum probable L-arabinose transmembrane ABC transporter protein rsc2756 or rs00098 SWALL:Q8XVS3 (EMBL:AL646071) (335 aa) fasta scores: E(): 4.1e-84, 72.89% id in 321 aa.
 0.992
BPSL2968
Putative L-arabinose transport system, exported protein; Similar to Ralstonia solanacearum probable L-arabinose-binding periplasmic rsc2758 or rs00096 SWALL:Q8XVS1 (EMBL:AL646071) (331 aa) fasta scores: E(): 1.5e-86, 71.56% id in 327 aa, and to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF or b1901 SWALL:ARAF_ECOLI (SWALL:P02924) (329 aa) fasta scores: E(): 5.3e-57, 48.93% id in 327 aa.
 
 0.957
rbsC
Putative ABC ribose transport system, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 1.3e-45, 53.31% id in 302 aa, and to Salmonella typhimurium, and Salmonella typhi ABC superfamily stm3883 or sty3895 SWALL:Q8XFM3 (EMBL:AE008881) (321 aa) fasta scores: E(): 5.1e-46, 53.97% id in 302 aa.
 
 0.874
BPSL1791
Putative membrane protein; Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4322 or agr_l_1078 SWALL:Q8U7X7 (EMBL:AE009360) (327 aa) fasta scores: E(): 1.3e-63, 64.72% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or z5251 or ecs4692 SWALL:RBSC_ECO57 (SWALL:P04984) (321 aa) fasta scores: E(): 3.4e-43, 47.41% id in 310 aa. Note: this CDS is longer in its N-terminal region than most of its database matches.
 
 0.872
BPSL1832
Similar to Escherichia coli, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 5.3e-31, 39.33% id in 300 aa, and to Pseudomonas aeruginosa membrane protein component of ABC ribose transporter pa1948 SWALL:Q9I2F6 (EMBL:AE004621) (332 aa) fasta scores: E(): 1e-84, 78.59% id in 327 aa.
 
 0.859
BPSS2070
Similar to Escherichia coli ribose transport system permease protein RbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2.7e-21, 29.39% id in 296 aa, and to Rhizobium meliloti putative ABC transporter permease ra0034 or sma0070 SWALL:Q931B0 (EMBL:AE007198) (327 aa) fasta scores: E(): 1.1e-72, 63.07% id in 325 aa.
 
 0.859
BPSS0788
Similar to Escherichia coli ribose transport system permease protein rbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 6.4e-29, 36.67% id in 319 aa, and to Rhizobium loti ABC transporter, permease protein mll8565 SWALL:Q982N4 (EMBL:AP003014) (338 aa) fasta scores: E(): 2.6e-29, 34.04% id in 329 aa.
 
 0.857
BPSS1030
Similar to Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 1.8e-18, 30.46% id in 302 aa, and to Bacillus halodurans ribose ABC transporter RbsC or bh3731 SWALL:Q9K6J8 (EMBL:AP001519) (314 aa) fasta scores: E(): 1e-20, 30.54% id in 311 aa, and to Thermotoga maritima ribose ABC transporter, permease protein tm0955 SWALL:Q9X050 (EMBL:AE001758) (331 aa) fasta scores: E(): 1.6e-20, 33.02% id in 321 aa.
 
 
 0.856
BPSS1031
Putative transmembrane sugar transport protein; Similar to Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 5.2e-23, 35.23% id in 315 aa, and to Rhizobium loti permease protein of ribose ABC transporter mll2145 SWALL:Q98J21 (EMBL:AP002999) (338 aa) fasta scores: E(): 1e-22, 33.83% id in 334 aa, and to Streptomyces coelicolor bifunctional carbohydrate binding and transport protein sco2747 or scc57a.18 SWALL:Q9RDI0 (EMBL:AL939113) (651 aa) fasta scores: E(): 1.1e-21, 35.54% id in 332 aa; possible alternative start [...]
 
 
 0.856
BPSS0257
Putative ribose ABC transport system, substrate-binding exported protein; Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 4.1e-13, 28.18% id in 298 aa, and to Brucella melitensis D-ribose-binding periplasmic protein precursor bmei0393 SWALL:Q8YIQ0 (EMBL:AE009482) (325 aa) fasta scores: E(): 6.3e-54, 51.09% id in 321 aa.
 
 
 0.854
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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