STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspOType IV prepilin leader peptide type M1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (309 aa)    
Predicted Functional Partners:
BPSL3008
Similar to Aeromonas hydrophila type IV pilus assembly protein TapB SWALL:TAPB_AERHY (SWALL:P45792) (568 aa) fasta scores: E(): 1.3e-64, 51.04% id in 382 aa.
 
 
 0.958
pilC
Similar to Burkholderia pseudomallei pilus assembly protein PilC SWALL:Q9ZF71 (EMBL:AF110186) (186 aa) fasta scores: E(): 6e-62, 98.92% id in 186 aa, and to Aeromonas hydrophila type IV pilus assembly protein TapC SWALL:TAPC_AERHY (SWALL:P45793) (413 aa) fasta scores: E(): 1e-44, 35.85% id in 396 aa.
 
  
 0.958
gspG
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein G GspG SWALL:Q9ZF82 (EMBL:AF110185) (150 aa) fasta scores: E(): 2.1e-58, 100% id in 150 aa. Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 2.5e-27, 53.57% id in 140 aa.
 
  
 0.950
gspF
General secretory pathway protein F; Previously sequenced as Burkholderia pseudomallei general secretory pathway protein F GspF SWALL:Q9ZF84 (EMBL:AF110185) (405 aa) fasta scores: E(): 2.3e-145, 99.25% id in 405 aa. Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 9.6e-60, 43.1% id in 406 aa.
 
  
 0.923
pilQ
Putative type IV pilus biosynthesis protein; Similar to Escherichia coli BfpD SWALL:Q47070 (EMBL:Z68186) (534 aa) fasta scores: E(): 3.2e-44, 35.28% id in 496 aa, and to Salmonella dublin PilQ SWALL:Q9KHW5 (EMBL:AF247502) (571 aa) fasta scores: E(): 2.5e-31, 33.33% id in 471 aa.
 
 
 0.910
pilT
Similar to Neisseria gonorrhoeae twitching motility protein PilT SWALL:PILT_NEIGO (SWALL:Q06581) (374 aa) fasta scores: E(): 2.1e-25, 34.02% id in 291 aa, and to Pseudomonas aeruginosa twitching mobility protein PilT or pa0395 SWALL:PILT_PSEAE (SWALL:P24559) (344 aa) fasta scores: E(): 2.8e-24, 31.61% id in 329 aa.
 
   
 0.892
gspE
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.888
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.887
pilR
Putative type IV pilus biosynthesis protein; Similar to Escherichia coli BfpE SWALL:Q47071 (EMBL:Z68186) (352 aa) fasta scores: E(): 3e-47, 38.06% id in 352 aa, and to Salmonella typhi, and Salmonella dublin PilR or sty4546 SWALL:Q9ZIV0 (EMBL:AF000001) (361 aa) fasta scores: E(): 9.3e-29, 34.07% id in 361 aa.
 
  
 0.827
gspH
Previously sequenced as Burkholderia pseudomallei general secretory pathway protein H GspH SWALL:Q9ZF81 (EMBL:AF110185) (159 aa) fasta scores: E(): 4.1e-60, 100% id in 159 aa. Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 0.38, 29.73% id in 111 aa.
 
  
 0.816
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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