STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0099Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0279 or SciM SWALL:Q93IS3 (EMBL:AE008707) (161 aa) fasta scores: E(): 8e-39, 63.29% id in 158 aa, and to Yersinia pestis hypothetical protein ypo2937 SWALL:Q8ZCP1 (EMBL:AJ414154) (161 aa) fasta scores: E(): 7.9e-38, 55.69% id in 158 aa. Note: Also similar to BPSS0171 (162 aa) fasta scores: E(): 1.8e-43, 66.456% identity in 158 aa overlap. (160 aa)    
Predicted Functional Partners:
BPSS0097
Similar to Yersinia pestis hypothetical protein ypo2939 SWALL:Q8ZCN9 (EMBL:AJ414154) (174 aa) fasta scores: E(): 2.4e-48, 84.75% id in 164 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 6.7e-48, 76.66% id in 180 aa. Note: Also similar to BPSS0173 (194 aa) fasta scores: E(): 2e-48, 81.818% identity in 165 aa overlap.
 
 
 0.927
BPSS0098
Similar to Yersinia pestis hypothetical protein ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 1.3e-175, 84.6% id in 500 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciI protein SWALL:Q93IS7 (EMBL:AJ320483) (497 aa) fasta scores: E(): 9.3e-171, 83.36% id in 499 aa. Note: Also similar to BPSS0172 (500 aa) fasta scores: E(): 1.5e-182, 84.168% identity in 499 aa overlap.
 
 
 0.922
BPSS0518
Similar to Yersinia pestis hypothetical protein ypo0502 SWALL:Q8ZIJ6 (EMBL:AJ414143) (172 aa) fasta scores: E(): 1e-49, 72.09% id in 172 aa, and to Pseudomonas aeruginosa hypothetical protein pa0085 SWALL:Q9I747 (EMBL:AE004447) (162 aa) fasta scores: E(): 4.1e-13, 37.27% id in 169 aa.
  
  
 
0.913
BPSL3105
Similar to Ralstonia solanacearum hypothetical protein Rsp0745 or Rs01963 SWALL:Q8XRT6 (EMBL:AL646080) (167 aa) fasta scores: E(): 3.7e-49, 72.45% id in 167 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2367 SWALL:Q9I1B2 (EMBL:AE004663) (165 aa) fasta scores: E(): 1.1e-11, 32.91% id in 158 aa.
  
  
 
0.911
BPSS0102
Similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 1.8e-76, 55.78% id in 380 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 3.2e-24, 30.93% id in 375 aa. Note: The N-terminal region of this CDS does not present similarities to any of the database matches. Also similar to BPSS0168 (422 aa) fasta scores: E(): 1.9e-61, 46.283% identity in 417 aa overlap.
 
  
 0.906
BPSS0171
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0279 or SciM SWALL:Q93IS3 (EMBL:AE008707) (161 aa) fasta scores: E(): 2.9e-42, 68.12% id in 160 aa, and to Yersinia pestis hypothetical protein ypo2937 SWALL:Q8ZCP1 (EMBL:AJ414154) (161 aa) fasta scores: E(): 8.8e-37, 57.59% id in 158 aa. Note: Also similar to BPSS0099 (161 aa) fasta scores: E(): 4.1e-42, 66.456% identity in 158 aa overlap.
  
  
 
0.901
BPSS1498
Similar to Yersinia pestis hypothetical protein ypo1470 or ypo0973 or y2700 or y3363 SWALL:Q8XGB3 (EMBL:AJ414148) (163 aa) fasta scores: E(): 0.0042, 24.84% id in 161 aa, and to Pseudomonas aeruginosa secreted protein Hcp (HcpB or pa5267) and (HcpC or pa0263) and (hc or pa1512) SWALL:Q9HI36 (EMBL:AE004939) (172 aa) fasta scores: E(): 0.013, 25.14% id in 175 aa.
     
 0.901
BPSS0173
Similar to Yersinia pestis hypothetical protein ypo2939 SWALL:Q8ZCN9 (EMBL:AJ414154) (174 aa) fasta scores: E(): 1.8e-45, 78.31% id in 166 aa, and to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0273 or SciH SWALL:Q93IS8 (EMBL:AE008707) (180 aa) fasta scores: E(): 1.2e-44, 77.43% id in 164 aa. Note: This CDS is longer in its C-terminal region than most of its database matches and also similar to BPSS0097 (180 aa) fasta scores: E(): 4.5e-46, 81.818% identity in 165 aa overlap.
 
 
 0.886
BPSS2100
Similar to Pseudomonas aeruginosa hypothetical protein Pa0083 SWALL:Q9I749 (EMBL:AE004447) (172 aa) fasta scores: E(): 2.7e-40, 68.82% id in 170 aa, and to Xanthomonas axonopodis hypothetical protein Xac4147 SWALL:AAM38982 (EMBL:AE012065) (169 aa) fasta scores: E(): 2e-38, 69.64% id in 168 aa, and to Salmonella typhi hypothetical protein Sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 8.8e-38, 65.66% id in 166 aa. Similar to BPSS0097, 69.643% identity (70.482% ungapped) in 168 aa overlap, and to BPSS0173, 65.934% identity (65.934% ungapped) in 182 aa overlap.
 
 
 0.883
BPSS0516
Similar to Yersinia pestis hypothetical protein ypo0500 SWALL:Q8ZIJ8 (EMBL:AJ414143) (186 aa) fasta scores: E(): 5.8e-30, 55.76% id in 156 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 4.7e-28, 47.51% id in 181 aa.
 
 
 0.878
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.