node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BPSL2324 | dbpA | BPSL2324 | BPSS0145 | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 0.843 |
BPSL2324 | ppiA | BPSL2324 | BPSL2245 | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | Peptidyl-prolyl cis-trans isomerase A precursor; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.868 |
BPSL2324 | ppiB | BPSL2324 | BPSL2246 | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.868 |
BPSL2324 | rplD | BPSL2324 | BPSL3212 | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.777 |
BPSL2324 | rpsD | BPSL2324 | BPSL3188 | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.934 |
BPSL2324 | rpsE | BPSL2324 | BPSL3196 | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.785 |
dbpA | BPSL2324 | BPSS0145 | BPSL2324 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | Putative ATP-dependent helicase; Similar to C-terminal regions of Escherichia coli ATP-dependent helicase HrpA SWALL:HRPA_ECOLI (SWALL:P43329) (1300 aa) fasta scores: E(): 1.8e-126, 46.08% id in 1315 aa, and to Salmonella typhimurium helicase, ATP-dependent HrpA or stm1641 SWALL:Q8ZP95 (EMBL:AE008772) (1300 aa) fasta scores: E(): 7.2e-128, 46.3% id in 1313 aa. Poor translational start site, possible gene remnant. | 0.843 |
dbpA | nnrE | BPSS0145 | BPSL1414 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...] | 0.877 |
dbpA | pnp | BPSS0145 | BPSL1207 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.834 |
dbpA | ppiA | BPSS0145 | BPSL2245 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | Peptidyl-prolyl cis-trans isomerase A precursor; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.802 |
dbpA | ppiB | BPSS0145 | BPSL2246 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.798 |
dbpA | rplC | BPSS0145 | BPSL3213 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.799 |
dbpA | rplD | BPSS0145 | BPSL3212 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.754 |
dbpA | rplM | BPSS0145 | BPSL2911 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.757 |
dbpA | rpsD | BPSS0145 | BPSL3188 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.778 |
dbpA | rpsE | BPSS0145 | BPSL3196 | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.731 |
nnrE | dbpA | BPSL1414 | BPSS0145 | Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...] | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 0.877 |
pnp | dbpA | BPSL1207 | BPSS0145 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Similar to Escherichia coli ATP-independent RNA helicase DbpA or b1343 SWALL:DBPA_ECOLI (SWALL:P21693) (457 aa) fasta scores: E(): 3.1e-84, 55.02% id in 458 aa, and to Pseudomonas aeruginosa RNA helicase pa0455 SWALL:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: E(): 2.4e-109, 64.62% id in 458 aa; Belongs to the DEAD box helicase family. | 0.834 |
pnp | rplC | BPSL1207 | BPSL3213 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.905 |
pnp | rplD | BPSL1207 | BPSL3212 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.904 |