STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsCPutative ABC ribose transport system, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 1.3e-45, 53.31% id in 302 aa, and to Salmonella typhimurium, and Salmonella typhi ABC superfamily stm3883 or sty3895 SWALL:Q8XFM3 (EMBL:AE008881) (321 aa) fasta scores: E(): 5.1e-46, 53.97% id in 302 aa. (325 aa)    
Predicted Functional Partners:
BPSS0255
Similar to Escherichia coli ribose transport ATP-binding protein RbsA or b3749 SWALL:RBSA_ECOLI (SWALL:P04983) (501 aa) fasta scores: E(): 2.6e-60, 40.89% id in 494 aa, and to Yersinia pestis sugar transport ATP-binding protein ypo0858 SWALL:Q8ZHN2 (EMBL:AJ414145) (502 aa) fasta scores: E(): 1.6e-74, 48.77% id in 490 aa.
 0.996
BPSS0257
Putative ribose ABC transport system, substrate-binding exported protein; Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 4.1e-13, 28.18% id in 298 aa, and to Brucella melitensis D-ribose-binding periplasmic protein precursor bmei0393 SWALL:Q8YIQ0 (EMBL:AE009482) (325 aa) fasta scores: E(): 6.3e-54, 51.09% id in 321 aa.
 0.994
araG
L-arabinose transport system, ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 
 0.874
rbsA
Putative sugar ABC transport system, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.874
BPSL1833
Similar to Escherichia coli ribose transport ATP-binding protein RbsA or b3749 SWALL:RBSA_ECOLI (SWALL:P04983) (501 aa) fasta scores: E(): 1.9e-55, 41.24% id in 497 aa, and to Pseudomonas aeruginosa ribose transport protein pa1947 SWALL:Q9I2F7 (EMBL:AE004621) (510 aa) fasta scores: E(): 9.6e-112, 70.35% id in 506 aa.
 
 0.870
BPSL1793
Putative sugar-binding exported protein; Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4320 or agr_l_1084 SWALL:Q8U7X9 (EMBL:AE009360) (303 aa) fasta scores: E(): 1e-69, 67.79% id in 295 aa, and to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 1.1e-20, 32.33% id in 300 aa.
 
 0.868
BPSS1032
Putative sugar ABC transporter ATP-binding component; Similar to Bacillus subtilis ribose transport ATP-binding protein RbsA SWALL:RBSA_BACSU (SWALL:P36947) (493 aa) fasta scores: E(): 7.5e-23, 35.76% id in 548 aa, and to Thermotoga maritima sugar ABC transporter, ATP-binding protein tm0115 SWALL:Q9WXX0 (EMBL:AE001697) (520 aa) fasta scores: E(): 2.2e-22, 35.59% id in 545 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein r02565 or smc02337 SWALL:Q92MP8 (EMBL:AL591791) (501 aa) fasta scores: E(): 2.4e-22, 38.63% id in 541 aa.
 
 0.860
BPSS0787
Putative ABC transporter, ATP-binding protein; Similar to Escherichia coli ribose transport ATP-binding protein rbsA SWALL:RBSA_ECOLI (SWALL:P04983) (501 aa) fasta scores: E(): 1.3e-41, 34.86% id in 499 aa, and to Streptomyces coelicolor ABC transporter protein, ATP binding component SCO2746 or SCC57A.17 SWALL:Q9RDI1 (EMBL:AL939113) (517 aa) fasta scores: E(): 5.3e-49, 40.51% id in 501 aa.
 
 0.859
BPSS1033
Putative ABC periplasmic-binding sugar transport protein; Similar to Bacillus subtilis D-ribose-binding protein precursor RbsB SWALL:RBSB_BACSU (SWALL:P36949) (305 aa) fasta scores: E(): 2e-08, 24.02% id in 308 aa, and to Pseudomonas putida sugar-binding protein, putative pp2757 SWALL:AAN68365 (EMBL:AE016784) (323 aa) fasta scores: E(): 3.6e-61, 57.14% id in 322 aa, and to Pseudomonas putida ribose ABC transporter, periplasmic ribose-binding protein, putative pp2758 SWALL:AAN68366 (EMBL:AE016784) (342 aa) fasta scores: E(): 2.3e-60, 57.79% id in 308 aa, and to Yersinia pestis putative [...]
 
 
 0.857
BPSL1834
Putative ribose transport system, substrate-binding protein; Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 9.3e-15, 31.49% id in 308 aa, and to Pseudomonas aeruginosa binding protein component precursor of ABC ribose transporter pa1946 SWALL:Q9I2F8 (EMBL:AE004621) (319 aa) fasta scores: E(): 1.6e-78, 75.47% id in 314 aa.
 
 0.852
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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