STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0257Putative ribose ABC transport system, substrate-binding exported protein; Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB or b3751 SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 4.1e-13, 28.18% id in 298 aa, and to Brucella melitensis D-ribose-binding periplasmic protein precursor bmei0393 SWALL:Q8YIQ0 (EMBL:AE009482) (325 aa) fasta scores: E(): 6.3e-54, 51.09% id in 321 aa. (342 aa)    
Predicted Functional Partners:
BPSS0255
Similar to Escherichia coli ribose transport ATP-binding protein RbsA or b3749 SWALL:RBSA_ECOLI (SWALL:P04983) (501 aa) fasta scores: E(): 2.6e-60, 40.89% id in 494 aa, and to Yersinia pestis sugar transport ATP-binding protein ypo0858 SWALL:Q8ZHN2 (EMBL:AJ414145) (502 aa) fasta scores: E(): 1.6e-74, 48.77% id in 490 aa.
 
 0.994
rbsC
Putative ABC ribose transport system, permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 1.3e-45, 53.31% id in 302 aa, and to Salmonella typhimurium, and Salmonella typhi ABC superfamily stm3883 or sty3895 SWALL:Q8XFM3 (EMBL:AE008881) (321 aa) fasta scores: E(): 5.1e-46, 53.97% id in 302 aa.
 0.994
BPSL1791
Putative membrane protein; Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4322 or agr_l_1078 SWALL:Q8U7X7 (EMBL:AE009360) (327 aa) fasta scores: E(): 1.3e-63, 64.72% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or z5251 or ecs4692 SWALL:RBSC_ECO57 (SWALL:P04984) (321 aa) fasta scores: E(): 3.4e-43, 47.41% id in 310 aa. Note: this CDS is longer in its N-terminal region than most of its database matches.
 
 0.858
BPSL1832
Similar to Escherichia coli, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 5.3e-31, 39.33% id in 300 aa, and to Pseudomonas aeruginosa membrane protein component of ABC ribose transporter pa1948 SWALL:Q9I2F6 (EMBL:AE004621) (332 aa) fasta scores: E(): 1e-84, 78.59% id in 327 aa.
 
 0.858
araH
Similar to Escherichia coli L-arabinose transport system permease protein AraH or b1898/b1899 SWALL:ARAH_ECOLI (SWALL:P08532) (329 aa) fasta scores: E(): 1.1e-64, 57.92% id in 309 aa, and to Ralstonia solanacearum probable L-arabinose transmembrane ABC transporter protein rsc2756 or rs00098 SWALL:Q8XVS3 (EMBL:AL646071) (335 aa) fasta scores: E(): 4.1e-84, 72.89% id in 321 aa.
 
 0.858
BPSS2070
Similar to Escherichia coli ribose transport system permease protein RbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2.7e-21, 29.39% id in 296 aa, and to Rhizobium meliloti putative ABC transporter permease ra0034 or sma0070 SWALL:Q931B0 (EMBL:AE007198) (327 aa) fasta scores: E(): 1.1e-72, 63.07% id in 325 aa.
 
 0.858
rbsA
Putative sugar ABC transport system, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.856
BPSS0788
Similar to Escherichia coli ribose transport system permease protein rbsC SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 6.4e-29, 36.67% id in 319 aa, and to Rhizobium loti ABC transporter, permease protein mll8565 SWALL:Q982N4 (EMBL:AP003014) (338 aa) fasta scores: E(): 2.6e-29, 34.04% id in 329 aa.
 
 0.856
BPSS1030
Similar to Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 1.8e-18, 30.46% id in 302 aa, and to Bacillus halodurans ribose ABC transporter RbsC or bh3731 SWALL:Q9K6J8 (EMBL:AP001519) (314 aa) fasta scores: E(): 1e-20, 30.54% id in 311 aa, and to Thermotoga maritima ribose ABC transporter, permease protein tm0955 SWALL:Q9X050 (EMBL:AE001758) (331 aa) fasta scores: E(): 1.6e-20, 33.02% id in 321 aa.
 
 
 0.856
BPSS1031
Putative transmembrane sugar transport protein; Similar to Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 5.2e-23, 35.23% id in 315 aa, and to Rhizobium loti permease protein of ribose ABC transporter mll2145 SWALL:Q98J21 (EMBL:AP002999) (338 aa) fasta scores: E(): 1e-22, 33.83% id in 334 aa, and to Streptomyces coelicolor bifunctional carbohydrate binding and transport protein sco2747 or scc57a.18 SWALL:Q9RDI0 (EMBL:AL939113) (651 aa) fasta scores: E(): 1.1e-21, 35.54% id in 332 aa; possible alternative start [...]
 
 0.856
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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