STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS0842Putative transporter protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc1445 or rs03862 SWALL:Q8XZF6 (EMBL:AL646064) (400 aa) fasta scores: E(): 7.6e-85, 60% id in 400 aa, and to Klebsiella pneumoniae hypothetical protein SWALL:O87757 (EMBL:AJ011907) (404 aa) fasta scores: E(): 2.9e-76, 54.78% id in 376 aa. (402 aa)    
Predicted Functional Partners:
ilvA-2
Putative threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
 0.571
BPSL1771
Putative cobalamin biosynthesis related protein; Similar to C-terminal region of Ralstonia solanacearum putative precorrin methylase protein CbiG or rsp0619 or rs03748 SWALL:Q8XS62 (EMBL:AL646079) (254 aa) fasta scores: E(): 4.8e-06, 46.85% id in 143 aa, and to Pseudomonas denitrificans CobE protein SWALL:COBE_PSEDE (SWALL:P21635) (154 aa) fasta scores: E(): 0.36, 31.97% id in 147 aa. Possible gene remnant.
  
   
 0.552
BPSL0842
Similar to Pseudomonas putida benzoylformate decarboxylase MdlC SWALL:MDLC_PSEPU (SWALL:P20906) (528 aa) fasta scores: E(): 8.1e-74, 43.91% id in 526 aa, and to Pseudomonas aeruginosa benzoylformate decarboxylase pa4901 SWALL:Q9HUR2 (EMBL:AE004903) (528 aa) fasta scores: E(): 5.9e-77, 45.92% id in 527 aa; Belongs to the TPP enzyme family.
      
 0.499
BPSL2312
Similar to Escherichia coli, and Escherichia coli O157:H7 respiratory nitrate reductase 2 gamma chain NarV SWALL:NARV_ECOLI (SWALL:P19316) (226 aa) fasta scores: E(): 4.3e-38, 47.82% id in 230 aa, and to Escherichia coli respiratory nitrate reductase 1 gamma chain NarI or ChlI SWALL:NARI_ECOLI (SWALL:P11350) (225 aa) fasta scores: E(): 1.4e-37, 45.81% id in 227 aa, and to Ralstonia solanacearum probable respiratory nitrate reductase transmembrane protein rsp0977 or rs02309 SWALL:Q8XR82 (EMBL:AL646082) (227 aa) fasta scores: E(): 1.9e-69, 75.77% id in 227 aa. Similar to BPSS1156, 53.097 [...]
      
 0.493
BPSS0841
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsp0396 or rs00824 SWALL:Q8XSS1 (EMBL:AL646078) (326 aa) fasta scores: E(): 4.5e-39, 38.19% id in 322 aa, and to Xanthomonas campestris hypothetical protein xcc1731 SWALL:Q8P9W4 (EMBL:AE012274) (330 aa) fasta scores: E(): 1.3e-29, 35.46% id in 313 aa. Possible alternative upstream translational start sites. CDS is extended at the C-terminus in comparison to some orthologues.
  
  
 0.453
BPSL2311
Similar to Escherichia coli, and Escherichia coli O157:H7 respiratory nitrate reductase 1 delta chain NarJ SWALL:NARJ_ECOLI (SWALL:P11351) (236 aa) fasta scores: E(): 3.6e-14, 37.28% id in 228 aa, and to Ralstonia solanacearum putative respiratory nitrate reductase oxidoreductase protein narj or rsp0976 or rs02308 SWALL:Q8XR83 (EMBL:AL646082) (226 aa) fasta scores: E(): 7.3e-47, 64.57% id in 223 aa.
      
 0.407
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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