STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisQ-3Similar to Salmonella typhimurium, and Salmonella typhi histidine transport system permease protein HisQ SWALL:HISQ_SALTY (SWALL:P02913) (228 aa) fasta scores: E(): 1.5e-49, 62.44% id in 229 aa, and to Pseudomonas aeruginosa histidine transport system permease pa2924 SWALL:Q9HZS3 (EMBL:AE004718) (229 aa) fasta scores: E(): 2.1e-55, 67.69% id in 226 aa. Similar to BPSL1032, 76.856% identity (76.856% ungapped) in 229 aa overlap, and to BPSL2394, 77.293% identity (77.293% ungapped) in 229 aa overlap. (229 aa)    
Predicted Functional Partners:
hisP-3
Similar to Salmonella typhimurium histidine transport ATP-binding protein HisP SWALL:HISP_SALTY (SWALL:P02915) (258 aa) fasta scores: E(): 2.2e-61, 69.29% id in 254 aa, and to Pseudomonas aeruginosa histidine transport protein pa2926 SWALL:Q9HZS1 (EMBL:AE004718) (255 aa) fasta scores: E(): 6.5e-62, 71.37% id in 255 aa. Similar to BPSL2392, 78.656% identity (78.656% ungapped) in 253 aa overlap, and to BPSL1030, 78.125% identity (78.125% ungapped) in 256 aa overlap, and to BPSS1671, 51.460% identity (52.416% ungapped) in 274 aa overlap.
 
 
 0.997
hisM-3
Similar to Salmonella typhimurium, and Salmonella typhi histidine transport system permease protein HisM SWALL:HISM_SALTY (SWALL:P02912) (235 aa) fasta scores: E(): 1.3e-56, 61.63% id in 232 aa, and to Pseudomonas aeruginosa histidine transport system permease pa2925 SWALL:Q9HZS2 (EMBL:AE004718) (237 aa) fasta scores: E(): 1.1e-62, 64.97% id in 237 aa. Similar to BPSL1031, 74.153% identity (74.153% ungapped) in 236 aa overlap, and to BPSL2393, 67.511% identity (67.511% ungapped) in 237 aa overlap.
 
 
0.993
hisP-2
Similar to Salmonella typhimurium histidine transport ATP-binding protein HisP SWALL:HISP_SALTY (SWALL:P02915) (258 aa) fasta scores: E(): 1.5e-61, 70.35% id in 253 aa, and to Pseudomonas aeruginosa arginine/ornithine transport ATP-binding protein AotP or pa0892 SWALL:AOTP_PSEAE (SWALL:O30506) (254 aa) fasta scores: E(): 1.3e-61, 71.93% id in 253 aa. Similar to BPSL1030, 87.747% identity (87.747% ungapped) in 253 aa overlap, and to BPSS0983, 78.656% identity (78.656% ungapped) in 253 aa overlap, and to BPSS2335, 51.417% identity (54.043% ungapped) in 247 aa overlap, and to the C-termin [...]
 
 
 0.989
hisP
Similar to Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 4.6e-62, 70.86% id in 254 aa, and to Pseudomonas aeruginosa arginine/ornithine transport ATP-binding protein pa0892 SWALL:AOTP_PSEAE (SWALL:O30506) (254 aa) fasta scores: E(): 4e-62, 71.76% id in 255 aa.
 
 
 0.987
argT
Similar to Escherichia coli lysine-arginine-ornithine-binding periplasmic protein precursor ArgT or b2310 SWALL:ARGT_ECOLI (SWALL:P09551) (260 aa) fasta scores: E(): 2.6e-52, 53.66% id in 259 aa, and histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 3.5e-52, 52.51% id in 259 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.982
hisJ
Similar to Escherichia coli, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 3.2e-55, 55.81% id in 258 aa, and to Salmonella typhi histidine-binding periplasmic protein sty2584 SWALL:Q8Z510 (EMBL:AL627274) (260 aa) fasta scores: E(): 7.6e-55, 55.81% id in 258 aa; Belongs to the bacterial solute-binding protein 3 family.
 
  0.956
BPSL2383
Similar to Salmonella typhimurium histidine-binding periplasmic protein precursor HisJ SWALL:HISJ_SALTY (SWALL:P02910) (260 aa) fasta scores: E(): 1.1e-45, 47.26% id in 256 aa, and to Yersinia pestis histidine-binding periplasmic protein ypo2774 SWALL:Q8ZD19 (EMBL:AJ414153) (262 aa) fasta scores: E(): 1.1e-47, 50.95% id in 261 aa. Similar to BPSL3383, 55.636% identity (56.250% ungapped) in 275 aa overlap, and to BPSS0269, 51.953% identity (51.953% ungapped) in 256 aa overlap, and to BPSL1033, 51.575% identity (51.575% ungapped) in 254 aa overlap; Belongs to the bacterial solute-binding [...]
 
  0.956
BPSL3383
Putative oxidoreductase (fragment); Pfam match to entry PF02913 FAD-oxidase_C, FAD linked oxidases, C-terminal domain, score 82.2, E-value 3.9e-23; Belongs to the bacterial solute-binding protein 3 family.
 
  0.956
hisM
Similar to Escherichia coli, and Escherichia coli O157:H7 histidine transport system permease protein HisM or b2307 or z3569 or ecs3191 SWALL:HISM_ECOLI (SWALL:P20091) (238 aa) fasta scores: E(): 3.6e-64, 67.09% id in 234 aa, and to Pseudomonas aeruginosa histidine transport system permease pa2925 SWALL:Q9HZS2 (EMBL:AE004718) (237 aa) fasta scores: E(): 6.9e-66, 68.93% id in 235 aa.
 
 
0.951
hisM-2
Similar to Salmonella typhimurium, and Salmonella typhi histidine transport system permease protein HisM SWALL:HISM_SALTY (SWALL:P02912) (235 aa) fasta scores: E(): 1.2e-59, 61.96% id in 234 aa, and to Yersinia pestis histidine transport system permease protein ypo2776 SWALL:Q8ZD17 (EMBL:AJ414153) (238 aa) fasta scores: E(): 1.9e-60, 63.36% id in 232 aa. Similar to BPSL1031, 74.138% identity (74.138% ungapped) in 232 aa overlap, and to BPSS0982, 67.511% identity (67.511% ungapped) in 237 aa overlap.
 
 
0.950
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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