STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
betAPutative choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (565 aa)    
Predicted Functional Partners:
betB
Putative betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 
 0.983
BPSL3419
Putative GMC oxidoreductase; Similar to Ralstonia solanacearum putative choline dehydrogenase lipoprotein oxidoreductase beta or Rsc3345 or Rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: E(): 1e-158, 72.81% id in 548 aa, and to Escherichia coli choline dehydrogenase beta or b0311 SWALL:BETA_ECOLI (SWALL:P17444) (556 aa) fasta scores: E(): 1.9e-69, 39.59% id in 538 aa.
  
  
 
0.911
BPSS1729
Putative transposase (fragment); Probable gene remnant. Similar to the N-terminal regions of Xylella fastidiosa IS1327 transposase Tnp SWALL:Q87BW4 (EMBL:AE012558) (188 aa) fasta scores: E(): 4.3e-05, 40.22% id in 87 aa, and to Pantoea agglomerans IS1327 containing a transposase TnpA SWALL:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 0.00022, 39.08% id in 87 aa.
   
 
 0.908
BPSS1765
Putative osmotic adaptation-related protein; Similar to the eukaryotic Beta vulgaris choline monooxygenase, chloroplast precursor Cmo SWALL:CHMO_BETVU (SWALL:O22553) (446 aa) fasta scores: E(): 6e-12, 25.75% id in 365 aa, and to Ralstonia solanacearum probable dioxygenase rsc2224 or rs01375 SWALL:Q8XX92 (EMBL:AL646068) (365 aa) fasta scores: E(): 2e-115, 73.55% id in 363 aa.
    
 0.905
plcN2
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 2.5e-77, 48.87% id in 708 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 2.2e-128, 52.84% id in 721 aa. Similar to BPSL2403, 52.705% identity (56.632% ungapped) in 721 aa overlap.
     
  0.800
psd
Putative decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
BPSL1876
Similar to Arabidopsis thaliana putative phospholipase t12j13.18 or t21p5.4 SWALL:Q9S816 (EMBL:AC009327) (521 aa) fasta scores: E(): 3.4e-32, 30.87% id in 502 aa, and to Sulfolobus solfataricus acid phosphatase, putative sso2789 SWALL:Q97V43 (EMBL:AE006873) (511 aa) fasta scores: E(): 5.1e-08, 25.63% id in 476 aa.
     
  0.800
plcN
Hypothetical protein (pseudogene); Hydrolyzes phosphatidylserine as well as phosphatidylcholine.
     
  0.800
BPSL2525
Conserved hypothetical protein; Similar to several including: Rhizobium loti hypothetical protein Mlr5374 SWALL:Q98BY6 (EMBL:AP003006) (199 aa) fasta scores: E(): 9.8e-26, 47.36% id in 190 aa and to Bradyrhizobium japonicum pPmtA protein pmtA SWALL:Q9LCT2 (EMBL:Y09633) (199 aa) fasta scores: E(): 9.8e-20, 42.28% id in 201 aa.
     
  0.800
BPSS0067
Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN or pa3319 SWALL:PHLN_PSEAE (SWALL:P15713) (692 aa) fasta scores: E(): 6e-54, 53.29% id in 728 aa, and to Burkholderia pseudomallei non-hemolytic phospholipase C precursor PlcN SWALL:PHLN_BURPS (SWALL:Q9RGS8) (700 aa) fasta scores: E(): 4e-39, 45.43% id in 744 aa.
     
  0.800
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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