STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1385Transposase (fragment); Probable gene remnant. Similar to the C-terminal regions of Escherichia coli transposase for transposon Tn1721 TnpA SWALL:TNP9_ECOLI (SWALL:P51565) (988 aa) fasta scores: E(): 6.2e-13, 48.71% id in 117 aa, and Pseudomonas aeruginosa transposase for transposon Tn501 TnpA SWALL:TNP5_PSEAE (SWALL:P06695) (988 aa) fasta scores: E(): 6.2e-13, 48.71% id in 117 aa. (328 aa)    
Predicted Functional Partners:
BPSS1384
Putative membrane protein; No significant database matches.
      
 0.686
bipB
Putative cell invasion protein; Plays a role in the bacterium-induced formation of multinucleated giant cell (MNGC), which is formed after host cell fusion, as well as in the intercellular spreading of bacteria and in the induction of apoptosis in macrophages. May act in concert with other effector proteins to induce fusion of host cell membranes.
      
 0.408
BPSS2242
Putative oxidoreductase; Similar to Xanthomonas campestris glucose 1-dehydrogenase homolog YxnA or xcc1992 SWALL:AAM41281 (EMBL:AE012304) (292 aa) fasta scores: E(): 6.3e-44, 51.15% id in 260 aa, and to Actinosynnema pretiosum glucose 1-dehydrogenase asm27 SWALL:AAM54105 (EMBL:AF453501) (341 aa) fasta scores: E(): 1e-33, 43.51% id in 262 aa, and to Bacillus subtilis hypothetical oxidoreductase YqjQ SWALL:YQJQ_BACSU (SWALL:P54554) (259 aa) fasta scores: E(): 4.7e-16, 31.43% id in 264 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.408
bsaQ
Type III secretion system protein; Similar to Salmonella typhimurium, and Salmonella typhi invasion protein InvA or stm2896 or sty3019 SWALL:INVA_SALTY (SWALL:P35657) (685 aa) fasta scores: E(): 7.7e-135, 56.05% id in 694 aa, and to Shigella flexneri, and Shigella sonnei MxiA protein or VirH or cp0147 SWALL:MXIA_SHIFL (SWALL:P35533) (686 aa) fasta scores: E(): 5.3e-133, 55.57% id in 691 aa.
      
 0.400
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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