STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1628Putative type III secretion protein; Similar to Burkholderia pseudomallei orf7 SWALL:Q93KZ9 (EMBL:AF074878) (168 aa) fasta scores: E(): 4.1e-08, 33.95% id in 162 aa, and to Ralstonia solanacearum HrpD protein SWALL:Q52496 (EMBL:AJ245811) (166 aa) fasta scores: E(): 0.0027, 32.14% id in 140 aa. (175 aa)    
Predicted Functional Partners:
BPSS1625
Putative type III secretion protein; Similar to Xanthomonas oryzae HrpB4 SWALL:Q9LBD4 (EMBL:AF026197) (209 aa) fasta scores: E(): 0.0038, 29.41% id in 204 aa, and to Ralstonia solanacearum HrpH protein or rsp0868 or rs01639 SWALL:Q52493 (EMBL:AJ245811) (209 aa) fasta scores: E(): 0.0068, 33.89% id in 177 aa.
       0.778
BPSS1627
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctN SWALL:Q93KZ8 (EMBL:AF074878) (449 aa) fasta scores: E(): 1.1e-115, 73.22% id in 437 aa, and to Xanthomonas campestris probable ATP synthase HrpB6 SWALL:HRB6_XANCV (SWALL:P80153) (442 aa) fasta scores: E(): 4.4e-106, 71.63% id in 416 aa.
       0.778
BPSS1626
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctL SWALL:Q93KZ7 (EMBL:AF074878) (289 aa) fasta scores: E(): 1.6e-30, 45.79% id in 238 aa, and to Ralstonia solanacearum HrpF protein or rsp0869 or rs01640 SWALL:Q8XRH8 (EMBL:AL646081) (301 aa) fasta scores: E(): 2.8e-16, 38.26% id in 230 aa.
       0.775
BPSS1629
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctT SWALL:Q93L00 (EMBL:AF074878) (240 aa) fasta scores: E(): 4.4e-34, 49.78% id in 231 aa, and to Xanthomonas campestris HrpB8 protein HrcT or xcc1238 SWALL:AAM40536 (EMBL:AE012222) (276 aa) fasta scores: E(): 5.2e-30, 43.12% id in 269 aa. CDS is extended at the C-terminus in comparison to similar proteins.
       0.775
BPSS1624
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 8.5e-50, 60.44% id in 273 aa, and to Ralstonia solanacearum Hrp conserved lipoprotein HrcJ or rsp0867 or rs01638 SWALL:Q52492 (EMBL:AJ245811) (269 aa) fasta scores: E(): 5.4e-42, 54.51% id in 266 aa.
       0.774
BPSS1623
Putative type III secretion protein; Similar to Xanthomonas oryzae Hrpb2 SWALL:Q9K3A4 (EMBL:AB045311) (130 aa) fasta scores: E(): 8.7e-06, 30.08% id in 123 aa, and to Xanthomonas campestris Hrpb2 SWALL:Q56782 (EMBL:U33548) (130 aa) fasta scores: E(): 1.9e-05, 29.26% id in 123 aa.
       0.773
BPSS1622
Putative type III secretion protein; Similar to Burkholderia pseudomallei hypothetical 19.6 kDa protein SWALL:Q93KZ3 (EMBL:AF074878) (178 aa) fasta scores: E(): 2.1e-14, 35.29% id in 170 aa, and to Xanthomonas oryzae HrpBL SWALL:Q9K2Q2 (EMBL:AB045311) (151 aa) fasta scores: E(): 4.2e-05, 31.7% id in 123 aa.
       0.741
BPSS1619
Putative type III secretion protein; Similar to Burkholderia pseudomallei hypothetical 24.8 kDa protein SWALL:Q9ZGR2 (EMBL:AF074878) (227 aa) fasta scores: E(): 4.2e-08, 35.13% id in 222 aa, and to Ralstonia solanacearum Hrp associated protein HpaP or rsp0862 or rs01633 SWALL:HPAP_RALSO (SWALL:P35651) (197 aa) fasta scores: E(): 3.8e-06, 33.51% id in 188 aa.
       0.450
BPSS1620
Putative type III secretion protein; Similar to Ralstonia solanacearum hypersensitivity response secretion protein HrcV or HrpO or rsp0863 or rs01634 SWALL:HRCV_RALSO (SWALL:P35656) (690 aa) fasta scores: E(): 4.6e-146, 60.49% id in 681 aa, and to Acidovorax avenae subsp. avenae putative HrpO SWALL:Q9F1J6 (EMBL:AB053454) (674 aa) fasta scores: E(): 6.3e-123, 55.78% id in 674 aa.
       0.450
BPSS1621
Putative type III secretion protein; Similar to Burkholderia pseudomallei SctU SWALL:Q93KZ2 (EMBL:AF074878) (351 aa) fasta scores: E(): 7.7e-60, 47.85% id in 349 aa, and to Ralstonia solanacearum hypersensitivity response secretion protein HrcU or HrpN or rsp0864 or rs01635 SWALL:HRCU_RALSO (SWALL:P35652) (357 aa) fasta scores: E(): 6.8e-54, 48.01% id in 352 aa.
       0.450
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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