STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1643Conserved hypothetical protein (fragment); Partial CDS. This CDS is truncated at the N-terminal region and contains an in-frame stop codon. Similar to the C-terminal region of Ralstonia solanacearum hypothetical transmembrane protein rsp1338 or rs04763 or rsp1307 or rs05692 SWALL:Q8XGL9 (EMBL:AL646084) (540 aa) fasta scores: E(): 1.5e-10, 47.05% id in 102 aa; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
BPSS0155
Putative LysR-family transcriptional regulator; Similar to Escherichia coli transcriptional activator protein LysR or b2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 1.7e-16, 34.95% id in 246 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5085 SWALL:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 1.7e-30, 41.58% id in 291 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.746
BPSL1572
Putative LysR-family transcriptional regulator; Similar to Thiobacillus denitrificans CbbR SWALL:Q9APD4 (EMBL:AF307090) (316 aa) fasta scores: E(): 1e-21, 32.65% id in 297 aa, and to Chromatium vinosum rubisco operon transcriptional regulator RbcR SWALL:RBCR_CHRVI (SWALL:P25544) (302 aa) fasta scores: E(): 1e-20, 32.99% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.741
BPSL0494
Similar to Bacillus subtilis als operon regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta scores: E(): 1.3e-26, 33.33% id in 288 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5218 SWALL:Q9HTX2 (EMBL:AE004934) (304 aa) fasta scores: E(): 7.6e-45, 48.09% id in 289 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.740
BPSL2032
Putative LysR-family transcriptional regulator; Similar to Bacillus subtilis als operon regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta scores: E(): 1.2e-22, 31.63% id in 294 aa, and to Rhizobium meliloti putative transcriptional regulator protein rb0012 or smb20009 SWALL:Q92XF0 (EMBL:AL603642) (309 aa) fasta scores: E(): 3.5e-38, 44.21% id in 285 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.732
BPSS0920
Putative transposase (fragment); Gene remnant. Similar to internal regions of Nitrosomonas europaea ATCC 19718 integrase, catalytic core SWALL:Q82T33 (EMBL:BX321863) (204 aa) fasta scores: E(): 3.4e-08, 84.21% id in 38 aa, and Bacteriophage phiE125 TnpB SWALL:Q8W6R2 (EMBL:AF447491) (284 aa) fasta scores: E(): 4.5e-08, 84.21% id in 38 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.726
BPSS0217
Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu4021 or agr_l_1663 SWALL:Q8U8R9 (EMBL:AE009333) (309 aa) fasta scores: E(): 2.6e-32, 37.2% id in 293 aa, and to Yersinia pestis probable LysR-family transcriptional regulator ypo1929 SWALL:Q8ZF22 (EMBL:AJ414150) (292 aa) fasta scores: E(): 1.6e-23, 31.59% id in 288 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.722
BPSL3250
Similar to Rhizobium loti probable transcriptional regulator Mll2263 SWALL:Q98IT2 (EMBL:AP002999) (304 aa) fasta scores: E(): 7.9e-50, 50.51% id in 291 aa, and to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SWALL:OXYR_ERWCA (SWALL:P71318) (302 aa) fasta scores: E(): 4.5e-12, 27.81% id in 302 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.705
BPSS1586
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1145 SWALL:Q9I4J0 (EMBL:AE004544) (300 aa) fasta scores: E(): 7.1e-44, 41.41% id in 297 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 1.3e-27, 32.42% id in 293 aa; Belongs to the LysR transcriptional regulatory family.
  
   
 0.698
BPSS1890
Similar to Acinetobacter lwoffii probable cat1 operon transcriptional activator SWALL:CATR_ACILW (SWALL:O33945) (303 aa) fasta scores: E(): 5.3e-46, 47.29% id in 296 aa, and to Burkholderia sp. NK8 LysR-type transcriptional regulatory protein CbeR SWALL:Q9AQS6 (EMBL:AB024746) (306 aa) fasta scores: E(): 2.5e-53, 55.19% id in 279 aa.
  
     0.656
BPSS1253
Putative LysR family transcriptional regulator; Similar to Thiobacillus denitrificans CbbR SWALL:Q9APD4 (EMBL:AF307090) (316 aa) fasta scores: E(): 5.5e-15, 27.97% id in 286 aa, and to the Acinetobacter lwoffii fragment of hypothetical 14.1 kDa protein SWALL:O86998 (EMBL:U77659) (124 aa) fasta scores: E(): 8.5e-36, 78.51% id in 121 aa, and to Rhizobium meliloti putative transcriptional regulator, LysR family protein rb0846 or smb21180 SWALL:Q92V68 (EMBL:AL603645) (317 aa) fasta scores: E(): 1.2e-35, 37.93% id in 290 aa.
  
     0.640
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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