STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1724Putative exported protein; Similar to Ralstonia solanacearum probable signal peptide protein rsc2001 or rs03569 SWALL:Q8XXW2 (EMBL:AL646067) (185 aa) fasta scores: E(): 6.9e-20, 49.41% id in 170 aa. (169 aa)    
Predicted Functional Partners:
prpD
Similar to Escherichia coli 2-methylcitrate dehydratase PrpD or b0334 SWALL:PRPD_ECOLI (SWALL:P77243) (482 aa) fasta scores: E(): 1e-152, 75.93% id in 482 aa, and to Ralstonia solanacearum probable protein PrpD or rsc2002 or rs03570 SWALL:Q8XXW1 (EMBL:AL646067) (488 aa) fasta scores: E(): 2.9e-159, 78.89% id in 488 aa.
       0.576
BPSS1723
Putative lyase; Similar to Ralstonia solanacearum probable lyase protein rsc1999 or rs03567 SWALL:Q8XXW4 (EMBL:AL646067) (320 aa) fasta scores: E(): 8.8e-69, 58.17% id in 318 aa, and to Leptospira interrogans citrate lyase, beta subunit CitE or la2841 SWALL:AAN50040 (EMBL:AE011449) (342 aa) fasta scores: E(): 7.8e-59, 47.48% id in 318 aa; Belongs to the HpcH/HpaI aldolase family.
       0.509
citB
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.496
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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