STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1727Putative hemagglutinin related protein; Similar to the N-terminal region of Bordetella pertussis filamentous hemagglutinin FhaB SWALL:FHAB_BORPE (SWALL:P12255) (3591 aa) fasta scores: E(): 7e-34, 29.76% id in 897 aa, and to Bordetella pertussis Fha protein FhaB2 SWALL:Q8VV99 (EMBL:AJ420989) (3590 aa) fasta scores: E(): 7e-34, 29.76% id in 897 aa. (908 aa)    
Predicted Functional Partners:
BPSS1728
Putative secretion/activator protein; Similar to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.6e-21, 25.86% id in 549 aa, and to Bordetella pertussis hemolysin activator-like protein FhaC precursor SWALL:FHAC_BORPE (SWALL:P35077) (584 aa) fasta scores: E(): 1.9e-53, 33.15% id in 567 aa.
 
 
 0.944
BPSS2052
Putative activator/secretion protein; Similar to Ralstonia solanacearum probable activation/secretion signal peptide protein Rsp0550 or Rs06123 SWALL:Q8XSC8 (EMBL:AL646079) (590 aa) fasta scores: E(): 9.6e-145, 62.7% id in 563 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 9.1e-28, 28.64% id in 412 aa, and to Serratia marcescens hemolysin activator protein precursor ShlB SWALL:HLYB_SERMA (SWALL:P15321) (557 aa) fasta scores: E(): 1.6e-25, 26.07% id in 510 aa. Possible alternative translational start sites.
 
 
 0.883
BPSS1735
Similar to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1731 or rs02919 SWALL:Q8XYM7 (EMBL:AL646066) (272 aa) fasta scores: E(): 4.3e-87, 86.76% id in 272 aa, and to Yersinia pestis putative ABC transporter permease ypo2841 SWALL:Q8ZCW7 (EMBL:AJ414154) (282 aa) fasta scores: E(): 7.7e-54, 56.56% id in 274 aa. Note: This CDS is longer in its N-terminal region than most of its database matches.
   
  
 0.640
BPSS1721
Putative GntR-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsc1997 or rs03565 SWALL:Q8XXW6 (EMBL:AL646067) (274 aa) fasta scores: E(): 4.4e-67, 67.66% id in 266 aa, and to Escherichia coli hypothetical transcriptional regulator YhfR or b3375 SWALL:YHFR_ECOLI (SWALL:P45544) (243 aa) fasta scores: E(): 5.6e-14, 29.49% id in 217 aa.
      
 0.626
BPSL2750
Putative membrane protein; Similar to Ralstonia solanacearum probable transmembrane protein rsc0752 or rs05101 SWALL:Q8Y1D8 (EMBL:AL646060) (125 aa) fasta scores: E(): 6.6e-25, 62.5% id in 112 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3041 SWALL:Q9HZG7 (EMBL:AE004729) (126 aa) fasta scores: E(): 1.6e-10, 38.52% id in 122 aa.
  
     0.427
BPSS1381
Similar to Rhizobium meliloti putative phospholipase protein rb0094 or smb20094 SWALL:Q92X68 (EMBL:AL603642) (590 aa) fasta scores: E(): 3.3e-51, 39.47% id in 461 aa, and to Caulobacter crescentus phospholipase D family protein cc0522 SWALL:Q9AAS4 (EMBL:AE005724) (505 aa) fasta scores: E(): 1.7e-42, 36.4% id in 478 aa, and to Caulobacter crescentus membrane protein, putative cc1538 SWALL:Q9A826 (EMBL:AE005828) (239 aa) fasta scores: E(): 3.3e-14, 33.19% id in 235 aa.
      
 0.408
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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