STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
BPSS1831Putative exopolysaccharide (EPS) biosynthesis related polysaccharide lipoprotein; Similar to Erwinia amylovora amylovoran export outer membrane protein AmsH precursor SWALL:AMSH_ERWAM (SWALL:Q46629) (377 aa) fasta scores: E(): 1.3e-34, 38.36% id in 391 aa, and to Escherichia coli, and Escherichia coli O157:H7 putative polysaccharide export protein Wza precursor b2062 or z3227 or ecs2867 SWALL:WZA_ECOLI (SWALL:P76388) (379 aa) fasta scores: E(): 7.2e-34, 36.45% id in 395 aa, and to Vibrio vulnificus capsular polysaccharide transport protein Wza SWALL:Q938A5 (EMBL:AY055488) (378 aa) fast [...] (391 aa)    
Predicted Functional Partners:
BPSS1830
Putative exopolysaccharide biosynthesis related tyrosine-protein kinase; Similar to Acinetobacter johnsonii tyrosine-protein kinase Ptk SWALL:PTK_ACIJO (SWALL:O52788) (733 aa) fasta scores: E(): 9.7e-68, 33.1% id in 728 aa, and to Escherichia coli tyrosine-protein kinase Wzc or b2060 SWALL:WZC_ECOLI (SWALL:P76387) (720 aa) fasta scores: E(): 4e-63, 36.25% id in 742 aa.
 
 
 0.991
BPSL2778
Putative tyrosine-protein kinase involved in EPS biosynthesis; Similar to Acinetobacter johnsonii tyrosine-protein kinase Ptk SWALL:PTK_ACIJO (SWALL:O52788) (733 aa) fasta scores: E(): 1.3e-70, 34.27% id in 741 aa, and to Ralstonia solanacearum putative tyrosine-protein kinase EpsB SWALL:EPB2_RALSO (SWALL:Q45409) (750 aa) fasta scores: E(): 1.4e-132, 53.65% id in 738 aa, and to Ralstonia solanacearum putative tyrosine-protein kinase EpsB or rsp1018 or rs02356 SWALL:EPB1_RALSO (SWALL:P58593) (751 aa) fasta scores: E(): 1.4e-132, 53.77% id in 742 aa.
 
 
 0.979
BPSS1978
Similar to Ralstonia solanacearum putative tyrosine-protein kinase EpsB SWALL:EPB2_RALSO (SWALL:Q45409) (750 aa) fasta scores: E(): 3.4e-36, 30.28% id in 733 aa, and to Escherichia coli O157:H7 tyrosine-protein kinase Etk or z1398 or ecs1137 SWALL:ETK_ECO57 (SWALL:Q8XC28) (726 aa) fasta scores: E(): 9.6e-36, 28.78% id in 747 aa.
 
 
 0.979
BPSS1834
Putative lipopolysaccharide biosynthesis related protein; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 2.5e-59, 39.65% id in 469 aa, and to Salmonella typhimurium putative undecaprenylphosphate glucosephosphotransferase WcaJ or stm2103 SWALL:Q9F799 (EMBL:AF285085) (464 aa) fasta scores: E(): 2.8e-58, 38.92% id in 465 aa. Note: Also similar to BPSL0618 (473 aa) fasta scores: E(): 3.5e-96, 50.433% identity in 462 aa overlap.
 
  
 0.952
BPSS1832
Phosphotyrosine phosphatase BceD; Similar to Escherichia coli, and Escherichia coli O157:H7 low molecular weight protein-tyrosine-phosphatase Wzb or b2061 or z3226 or ecs2866 SWALL:WZB_ECOLI (SWALL:P77153) (147 aa) fasta scores: E(): 5.1e-16, 40.27% id in 144 aa, and to Acinetobacter johnsonii low molecular weight protein-tyrosine-phosphatase Ptp SWALL:PTP_ACIJO (SWALL:O52787) (142 aa) fasta scores: E(): 1.7e-16, 39.86% id in 143 aa. Note: Also similar to BPSL2779 (145 aa) fasta scores: E(): 5.1e-15, 41.259% identity in 143 aa overlap.
 
  
 0.905
BPSL0618
Putative sugar transferase; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 9.8e-58, 37.08% id in 480 aa, and to Klebsiella pneumoniae probable capsular polysaccharide biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 8.3e-54, 35.71% id in 476 aa. Similar to BPSS1834, 50.433% identity (50.873% ungapped) in 462 aa overlap.
 
  
 0.889
udg2
UDP-glucose 6-dehydrogenase 2; Similar to Pseudomonas aeruginosa UDP-glucose 6-dehydrogenase Udg or Ugd or pa2022 SWALL:UDG_PSEAE (SWALL:O86422) (453 aa) fasta scores: E(): 5.7e-83, 51.97% id in 456 aa, and to Rhizobium meliloti UDP-glucose 6-dehydrogenase RkpK or r01082 or smc02641 SWALL:UDG_RHIME (SWALL:O54068) (437 aa) fasta scores: E(): 2.8e-70, 49.66% id in 453 aa. Note: Also similar to BPSL2511 Udg (467 aa) fasta scores: E(): 1.5e-121, 76.304% identity in 460 aa overlap.
     
 0.744
wcbD
Similar to Haemophilus influenzae capsule polysaccharide export inner-membrane protein BexC SWALL:BEXC_HAEIN (SWALL:P22930) (377 aa) fasta scores: E(): 7.1e-55, 41.99% id in 381 aa. Identical to Burkholderia mallei putative capsule polysaccharide export inner-membrane protein WcbD SWALL:Q9AI47 (EMBL:AF285636) (382 aa) fasta scores: E(): 3.7e-135, 100% id in 382 aa.
 
  
 0.687
wcbA
Similar to Escherichia coli capsule polysaccharide export protein KpsC SWALL:KSC5_ECOLI (SWALL:P42217) (675 aa) fasta scores: E(): 4.4e-65, 35.75% id in 674 aa, and to Burkholderia mallei putative capsular polysaccharide export protein WcbA SWALL:Q9AI50 (EMBL:AF285636) (671 aa) fasta scores: E(): 0, 99.85% id in 671 aa, and to previously sequenced Burkholderia pseudomallei putative capsular polysaccharide export protein WcbA SWALL:Q93UK2 (EMBL:AF228583) (671 aa) fasta scores: E(): 0, 99.4% id in 671 aa, and to Burkholderia thailandensis putative capsular polysaccharide export protein W [...]
 
  
 0.649
BPSS0418
Putative transport-related membrane protein; Similar to Escherichia coli, and Escherichia coli O6 capsule polysaccharide export inner-membrane protein KpsE or c3687 SWALL:KSE5_ECOLI (SWALL:P42214) (382 aa) fasta scores: E(): 0.00055, 22.35% id in 340 aa, and to Ralstonia solanacearum putative tyrosine-protein kinase EpsB SWALL:EPB2_RALSO (SWALL:Q45409) (750 aa) fasta scores: E(): 7.4e-06, 25.16% id in 302 aa. Note: The N-terminal region does not seem to present any similarities with database entries. Possible alternative translational start site.
 
  
 0.639
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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