STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1840Similar to Ralstonia solanacearum putative N-acetylmuramoyl-L-alanine amidase protein rsc1796 or rs04196 SWALL:Q8XYG2 (EMBL:AL646066) (343 aa) fasta scores: E(): 3.2e-86, 68.86% id in 334 aa, and to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase YbjR or b0867 SWALL:YBJR_ECOLI (SWALL:P75820) (276 aa) fasta scores: E(): 5e-34, 41.72% id in 290 aa. (344 aa)    
Predicted Functional Partners:
BPSS1016
Putative ionic antiporter; Similar to Escherichia coli calcium/proton antiporter ChaA or b1216 SWALL:CHAA_ECOLI (SWALL:P31801) (366 aa) fasta scores: E(): 3.3e-38, 37.89% id in 351 aa, and to Streptomyces coelicolor ionic transporter sco1962 or scc54.22C SWALL:Q9Z504 (EMBL:AL939110) (366 aa) fasta scores: E(): 1.7e-65, 57.26% id in 358 aa, and to Mycobacterium tuberculosis putative ionic transporter ChaA or rv1607 or mtv046.05 or mt1642 SWALL:O53910 (EMBL:AL022001) (360 aa) fasta scores: E(): 2.8e-63, 56.33% id in 355 aa.
  
     0.415
BPSS1839
Putative oxidative stress related rubrerythrin protein; Similar to the N-terminal region of Porphyromonas gingivalis rubrerythrin Rr or Rbr SWALL:RUBY_PORGI (SWALL:Q9AGG3) (200 aa) fasta scores: E(): 2.8e-17, 46.09% id in 141 aa, and of Desulfovibrio vulgaris rubrerythrin Rr SWALL:RUBY_DESVH (SWALL:P24931) (191 aa) fasta scores: E(): 5.8e-16, 45.58% id in 136 aa. Note: The C-terminal region of the database matches belongs to the rubredoxin family; this CDS presents no similarities to this region.
       0.415
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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