STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS1864Putative AraC-family regulatory protein; Similar to Streptomyces coelicolor putative transcriptional regulator sco6746 or sc5f2a.29 SWALL:Q9X7Q2 (EMBL:AL939129) (325 aa) fasta scores: E(): 2.3e-50, 50.94% id in 318 aa, and to Caulobacter crescentus transcriptional regulator, AraC family cc2960 SWALL:Q9A483 (EMBL:AE005960) (312 aa) fasta scores: E(): 5.1e-46, 47.92% id in 313 aa. Note: This CDS is longer in its N-terminal region than most of its database matches. (346 aa)    
Predicted Functional Partners:
BPSS0506
Similar to Anabaena sp. ThiJ family protein all7521 SWALL:Q8ZSI9 (EMBL:AP003602) (226 aa) fasta scores: E(): 2.7e-23, 39.6% id in 202 aa, and to Streptomyces coelicolor hypothetical protein sco6747 sco6747 or sc5f2a.30 SWALL:Q9X7Q3 (EMBL:AL939129) (211 aa) fasta scores: E(): 2.2e-14, 31.03% id in 203 aa.
  
     0.755
BPSS1863
Similar to Anabaena sp. thij family protein all7521 SWALL:Q8ZSI9 (EMBL:AP003602) (226 aa) fasta scores: E(): 2.7e-43, 53.36% id in 208 aa, and to Streptomyces coelicolor hypothetical protein sco6747 sco6747 or sc5f2a.30 SWALL:Q9X7Q3 (EMBL:AL939129) (211 aa) fasta scores: E(): 7e-30, 43.81% id in 210 aa.
 
    
0.643
BPSS1322
Putative AraC family transcriptional regulatory protein; Similar to Lactococcus lactis xylose regulatory protein XylR SWALL:Q9X421 (EMBL:AF092042) (319 aa) fasta scores: E(): 3.4e-05, 20.28% id in 281 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa3269 SWALL:Q9HYX2 (EMBL:AE004749) (284 aa) fasta scores: E(): 7e-24, 33.81% id in 275 aa, and to Agrobacterium tumefaciens transcriptional regulator, AraC family atu1081 or agr_c_1998 SWALL:Q8UGF7 (EMBL:AE009072) (285 aa) fasta scores: E(): 3e-23, 33.08% id in 272 aa.
  
   0.539
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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