STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS2098Similar to Pseudomonas aeruginosa hypothetical protein pa0085 SWALL:Q9I747 (EMBL:AE004447) (162 aa) fasta scores: E(): 5.4e-19, 40.24% id in 164 aa, and to Bradyrhizobium japonicum hypothetical protein bll3592 SWALL:BAC48857 (EMBL:AP005948) (161 aa) fasta scores: E(): 1.5e-18, 40.12% id in 162 aa. (163 aa)    
Predicted Functional Partners:
BPSS2095
Similar to Xanthomonas axonopodis hypothetical protein xac4141 SWALL:AAM38976 (EMBL:AE012064) (346 aa) fasta scores: E(): 2.7e-18, 38.75% id in 400 aa, and to Pseudomonas aeruginosa hypothetical protein pa0089 SWALL:Q9I743 (EMBL:AE004447) (348 aa) fasta scores: E(): 6.4e-17, 41.93% id in 372 aa. Possible alternative translational start site.
 
  
 0.949
BPSS2100
Similar to Pseudomonas aeruginosa hypothetical protein Pa0083 SWALL:Q9I749 (EMBL:AE004447) (172 aa) fasta scores: E(): 2.7e-40, 68.82% id in 170 aa, and to Xanthomonas axonopodis hypothetical protein Xac4147 SWALL:AAM38982 (EMBL:AE012065) (169 aa) fasta scores: E(): 2e-38, 69.64% id in 168 aa, and to Salmonella typhi hypothetical protein Sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 8.8e-38, 65.66% id in 166 aa. Similar to BPSS0097, 69.643% identity (70.482% ungapped) in 168 aa overlap, and to BPSS0173, 65.934% identity (65.934% ungapped) in 182 aa overlap.
 
 
 0.946
BPSS2093
Hypothetical protein (fragment); Probable gene remnant. No significant database matches to the full length CDS. N-terminus is similar to the N-terminal region of Yersinia pestis hypothetical protein ypo0763 SWALL:Q8ZHW6 (EMBL:AJ414144) (439 aa) fasta scores: E(): 1.4e-29, 40.09% id in 212 aa. Similar to the N-terminal region of BPSS2055, 71.689% identity (72.018% ungapped) in 219 aa overlap.
 
  
 0.936
BPSS2097
Similar to Xanthomonas axonopodis hypothetical protein xac4143 SWALL:AAM38978 (EMBL:AE012064) (167 aa) fasta scores: E(): 4.3e-18, 40.96% id in 166 aa, and to Pseudomonas aeruginosa hypothetical protein pa0087 SWALL:Q9I745 (EMBL:AE004447) (169 aa) fasta scores: E(): 7.9e-18, 44.93% id in 158 aa.
 
  
 0.934
BPSS2099
Similar to Pseudomonas aeruginosa hypothetical protein pa0084 SWALL:Q9I748 (EMBL:AE004447) (498 aa) fasta scores: E(): 3.9e-153, 72.83% id in 497 aa, and to Yersinia pestis hypothetical protein ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 7e-153, 72.52% id in 495 aa. Similar to BPSS0098, 73.642% identity (73.790% ungapped) in 497 aa overlap, and to BPSS0172, 72.233% identity (72.672% ungapped) in 497 aa overlap, and to BPSS0517, 61.290% identity (61.414% ungapped) in 496 aa overlap.
 
 
 0.932
BPSS2096
Similar to Pseudomonas aeruginosa hypothetical protein pa0088 SWALL:Q9I744 (EMBL:AE004447) (619 aa) fasta scores: E(): 4.4e-110, 47.77% id in 628 aa, and to Xanthomonas axonopodis hypothetical protein xac4142 SWALL:AAM38977 (EMBL:AE012064) (627 aa) fasta scores: E(): 9.1e-109, 46.74% id in 629 aa.
 
  
 0.931
BPSS2101
Similar to Xanthomonas axonopodis hypothetical protein Xac4112 SWALL:AAM38947 (EMBL:AE012060) (347 aa) fasta scores: E(): 5.7e-23, 38.96% id in 367 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0082 SWALL:Q9I750 (EMBL:AE004447) (344 aa) fasta scores: E(): 3.8e-18, 35.79% id in 366 aa, and to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0266 or sciA SWALL:Q93IT5 (EMBL:AE008707) (351 aa) fasta scores: E(): 1.4e-13, 31.94% id in 360 aa.
 
  
 0.922
BPSS2105
Putative outer membrane porin protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 5.2e-19, 33.03% id in 451 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 5.4e-63, 47.12% id in 452 aa, and to Xanthomonas axonopodis hypothetical protein Xac4120 SWALL:Q8PF65 (EMBL:AE012061) (451 aa) fasta scores: E(): 1.2e-45, 40.29% id in 412 aa.
 
  
 0.889
BPSS0097
Similar to Yersinia pestis hypothetical protein ypo2939 SWALL:Q8ZCN9 (EMBL:AJ414154) (174 aa) fasta scores: E(): 2.4e-48, 84.75% id in 164 aa, and to Salmonella typhi hypothetical protein sty0297 SWALL:Q8Z970 (EMBL:AL627266) (180 aa) fasta scores: E(): 6.7e-48, 76.66% id in 180 aa. Note: Also similar to BPSS0173 (194 aa) fasta scores: E(): 2e-48, 81.818% identity in 165 aa overlap.
 
 
 0.870
BPSS0173
Similar to Yersinia pestis hypothetical protein ypo2939 SWALL:Q8ZCN9 (EMBL:AJ414154) (174 aa) fasta scores: E(): 1.8e-45, 78.31% id in 166 aa, and to Salmonella typhimurium, and Salmonella enterica subsp. enterica serovar Typhimurium putative cytoplasmic protein stm0273 or SciH SWALL:Q93IS8 (EMBL:AE008707) (180 aa) fasta scores: E(): 1.2e-44, 77.43% id in 164 aa. Note: This CDS is longer in its C-terminal region than most of its database matches and also similar to BPSS0097 (180 aa) fasta scores: E(): 4.5e-46, 81.818% identity in 165 aa overlap.
 
 
 0.870
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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