STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPSS2107Putative exported protein; Similar to Salmonella typhimurium putative outer membrane lipoprotein stm0280 SWALL:Q8ZRL4 (EMBL:AE008707) (178 aa) fasta scores: E(): 2.5e-15, 37.95% id in 166 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciN protein precursor SWALL:Q93IS2 (EMBL:AJ320483) (163 aa) fasta scores: E(): 3.1e-15, 38.96% id in 154 aa, and to Salmonella typhi probable lipoprotein sty0303 SWALL:Q8Z967 (EMBL:AL627266) (178 aa) fasta scores: E(): 3.4e-15, 40.37% id in 161 aa. (172 aa)    
Predicted Functional Partners:
BPSS2105
Putative outer membrane porin protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 5.2e-19, 33.03% id in 451 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 5.4e-63, 47.12% id in 452 aa, and to Xanthomonas axonopodis hypothetical protein Xac4120 SWALL:Q8PF65 (EMBL:AE012061) (451 aa) fasta scores: E(): 1.2e-45, 40.29% id in 412 aa.
 
  
 0.978
BPSS2106
Similar to Pseudomonas aeruginosa hypothetical protein Pa0079 SWALL:Q9I753 (EMBL:AE004447) (444 aa) fasta scores: E(): 1.8e-58, 49.88% id in 451 aa, and to Yersinia pestis hypothetical protein ypo2934 or y1549 SWALL:Q8ZCP3 (EMBL:AJ414154) (449 aa) fasta scores: E(): 1.2e-54, 37% id in 454 aa, and to Xanthomonas axonopodis hypothetical protein Xac4121 SWALL:AAM38956 (EMBL:AE012061) (444 aa) fasta scores: E(): 1e-53, 46.44% id in 450 aa.
 
  
 0.951
BPSS2103
Hypothetical protein; Similar to N-terminus of Pseudomonas aeruginosa hypothetical protein Pa0076 SWALL:Q9I756 (EMBL:AE004446) (226 aa) fasta scores: E(): 1.6e-05, 36.17% id in 141 aa, and to N-terminus of Rhizobium leguminosarum ImpM SWALL:Q93EC1 (EMBL:AF361470) (457 aa) fasta scores: E(): 2.4e-05, 28.98% id in 207 aa.
 
    0.947
BPSS2104
Putative membrane protein; Similar to Vibrio cholerae IcmF-related protein vca0120 or IcmF SWALL:Q9KN45 (EMBL:AE004353) (1181 aa) fasta scores: E(): 6.1e-46, 26.92% id in 1237 aa, and to Rhizobium loti hypothetical protein Mlr2360 SWALL:Q98IK4 (EMBL:AP002999) (1176 aa) fasta scores: E(): 3e-103, 33.08% id in 1209 aa, and to Xanthomonas axonopodis hypothetical protein Xac4119 SWALL:AAM38954 (EMBL:AE012061) (1176 aa) fasta scores: E(): 2.2e-77, 34.27% id in 1205 aa.
 
  
 0.942
BPSS0100
Putative exported protein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciN protein precursor SciN SWALL:Q93IS2 (EMBL:AJ320483) (163 aa) fasta scores: E(): 5.3e-21, 39.21% id in 153 aa, and to Pseudomonas aeruginosa hypothetical protein pa0080 SWALL:Q9I752 (EMBL:AE004447) (154 aa) fasta scores: E(): 1.4e-12, 35.24% id in 122 aa. Note: Also similar to BPSS0170 (171 aa) fasta scores: E(): 5.8e-24, 45.860% identity in 157 aa overlap.
  
  
 
0.916
BPSS0170
Putative lipoprotein; Similar to Salmonella enterica subsp. enterica serovar Typhimurium SciN protein precursor SWALL:Q93IS2 (EMBL:AJ320483) (163 aa) fasta scores: E(): 2.9e-21, 46.25% id in 160 aa, and to Pseudomonas aeruginosa hypothetical protein pa1666 SWALL:Q9I359 (EMBL:AE004594) (168 aa) fasta scores: E(): 6.4e-13, 39.85% id in 138 aa. Note: Also similar to BPSS0100 (161 aa) fasta scores: E(): 2.9e-21, 45.860% identity in 157 aa overlap.
  
  
 
0.913
BPSS0102
Similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 1.8e-76, 55.78% id in 380 aa, and to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 3.2e-24, 30.93% id in 375 aa. Note: The N-terminal region of this CDS does not present similarities to any of the database matches. Also similar to BPSS0168 (422 aa) fasta scores: E(): 1.9e-61, 46.283% identity in 417 aa overlap.
 
  
 0.910
BPSL3109
Putative lipoprotein; Similar to Ralstonia solanacearum putative transmembrane protein Rsp0741 or Rs01967 SWALL:Q8XRU0 (EMBL:AL646080) (193 aa) fasta scores: E(): 3.9e-40, 59.16% id in 191 aa.
  
  
 
0.905
BPSS0531
Similar to Yersinia pestis putative OmpA-family membrane protein ypo0514 SWALL:Q8ZII3 (EMBL:AJ414143) (536 aa) fasta scores: E(): 5.4e-45, 36.23% id in 505 aa. Internal region is weakly similar to Salmonella typhi putative membrane protein sty0305 SWALL:Q8Z965 (EMBL:AL627266) (433 aa) fasta scores: E(): 3.5e-13, 28.31% id in 445 aa. CDS is extended at the C-terminus in comparison to similar proteins.
 
  
 0.903
BPSS0529
Putative lipoprotein; Weakly similar to Yersinia pestis putative lipoprotein ypo0512 SWALL:Q8ZII5 (EMBL:AJ414143) (163 aa) fasta scores: E(): 1.1e-05, 23.7% id in 135 aa.
     
  0.900
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.