STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C0033ABC1 family protein kinase. (532 aa)    
Predicted Functional Partners:
CA_C2496
Predicted phosphatase of HAD hydrolase superfamily.
  
    0.885
CA_C0034
Hypothetical protein.
 
    0.850
CA_C0282
Cytosine/guanine deaminase related protein.
   
    0.599
CA_C0794
Nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase).
  
  
 0.535
recJ-2
SsDNA Exonuclease, RecJ.
      0.514
CA_C0151
Predicted SAM dependent methyltransferase.
  
 
 0.495
CA_C3321
Uncharacterized protein homolog of yveG B.subtilis; Belongs to the UPF0311 family.
   
 
 0.495
CA_C2574
Predicted S-adenosylmethionine-dependent methyltransferase.
   
 
 0.426
CA_C3659
S-adenosylmethionine-dependent methyltransferase.
   
 
 0.426
spoIID
Sporulation protein SpoIID.
   
    0.418
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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