STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C0831Sensory transduction histidine kinase. (366 aa)    
Predicted Functional Partners:
CA_C0830
Response regulator.
 
 0.967
CA_C0903
Sensory transduction histidine kinase.
 
 
0.885
CA_C0654
Sensory transduction histidine kinase.
 
 
 0.863
CA_C0564
Response regulator (REC, HTH domains).
 
 0.856
CA_C3517
Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain).
 
 0.853
phoP
Response regulator (CheY-like receiver domain and a HTH).
 
 0.851
CA_C0289
Response regulator (CheY domain, HTH domain).
 
 0.850
CA_C0860
Two-component response regulator.
 
 0.850
CA_C1700
Response regulator (CheY-like receiver domain and DNA-binding HTH domain).
 
 0.849
CA_C2759
Response regulator (CheY receiver domain and HTH-type DNA-binding domain).
 
 0.848
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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