STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araA-2L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (488 aa)    
Predicted Functional Partners:
araD
Ribulose-5-phosphate 4-epimerase family protein.
 
  
 0.943
xylB
Sugar kinase, possible xylulose kinase.
 
  
 0.932
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
0.922
xylT
D-xylose-proton symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
  
 0.922
xynD
Beta-xylosidase, family 43 glycosyl hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.887
tal
Transaldolase, TAL; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
  
 0.853
CA_C1529
Beta-xylosidase, family 43 glycosyl hydrolase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.722
galM
Aldose-1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 0.721
araE
Possible sugar-proton symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
  
 0.688
xylB-2
Xylulose kinase.
  
  
 0.678
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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