STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapGAspartokinase; Belongs to the aspartokinase family. (399 aa)    
Predicted Functional Partners:
asd-2
Aspartate semialdehyde dehydrogenase (gene asd); Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.975
asd
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.974
CA_C0278
Aspartate kinase; Belongs to the aspartokinase family.
     
 
0.900
aspB
Aspartate Aminotransferase.
 
 0.894
lisA
Diaminopimelate decarboxilase, lisA; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
   
 0.872
asnB
N-terminal domain of asparagine synthase.
  
 
 0.864
CA_C2249
C-terminal domain of asparagine synthase.
  
 
 0.864
CA_C1001
Aspartate aminotransferase.
 
 0.861
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.849
CA_C2832
PLP-dependent aminotransferase.
  
 0.839
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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