STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C27078-oxoguanine-DNA-glycosylase. (292 aa)    
Predicted Functional Partners:
exoA
Exodeoxyribonuclease (exoA).
  
 0.836
CA_C2706
Uncharacterized conserved membrane protein, DedA family.
  
    0.793
CA_C2364
Uncharacterized protein, homolog of gi|2274936 Eubacterium acidaminophilum.
  
     0.720
polA
DNA polymerase I, polA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 
 0.696
pyrB
Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     0.675
hbd
Beta-hydroxybutyryl-CoA dehydrogenase, NAD-dependent; Belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
       0.663
CA_C2385
Hypothetical protein.
  
     0.581
bcd
Butyryl-CoA dehydrogenase; Belongs to the acyl-CoA dehydrogenase family.
  
  
 0.575
CA_C3588
DNA replication protein DnaC.
  
     0.567
dinB
DNA-damage repair protein, dinP/uvrX ortholog; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
 
 0.564
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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