STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C3078Uncharacterized secreted protein, YBBR Bacillus subtilis homolog. (403 aa)    
Predicted Functional Partners:
dacA
Uncharacterized conserved protein, YPPB B.subtilis ortholog; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.972
CA_C3077
Uncharacterized FAD-dependent dehydrogenase.
  
    0.816
ptb
Phosphate butyryltransferase; Catalyzes the conversion of butyryl-CoA through butyryl phosphate to butyrate.
  
    0.668
CA_C3587
DNA replication protein DnaD.
 
     0.659
CA_C3080
Hypothetical protein.
  
    0.624
CA_C3588
DNA replication protein DnaC.
 
     0.609
CA_C2988
Uncharacterized conserved protein, YABE B.subtilis ortholog.
 
    0.586
CA_C3081
Spore-cortex-lytic enzyme, SLEB.
  
    0.565
CA_C0650
Adenilate cyclase, class2 (thermophilic).
  
    0.564
buk
Butyrate kinase, BUK; Catalyzes the conversion of butyryl-CoA through butyryl phosphate to butyrate; Belongs to the acetokinase family.
  
    0.541
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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