STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C3337Predicted amidohodrolase (dihydroorotase family). (262 aa)    
Predicted Functional Partners:
CA_C3338
Predicted transcriptional regulator.
       0.572
CA_C3336
Predicted cAMP-binding domain, regulatory protein, diverged.
       0.499
spmA
Spore maturation protein A (gene spmA).
   
    0.465
spmB
Spore maturation protein B (gene spmB).
   
    0.465
metH
Cobalamine-dependent methionine synthase I (methyltransferase and cobalamine-binding domain); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
    0.459
CA_C0291
FUSION: methionine sintase I (cobalamin dependent) and 5,10 methylenetetrahydrofolate reductase.
  
  
 0.457
CA_C1498
Predicted flavoprotein.
   
    0.451
CA_C3321
Uncharacterized protein homolog of yveG B.subtilis; Belongs to the UPF0311 family.
  
  
 0.404
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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