STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CA_C3491Protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family). (145 aa)    
Predicted Functional Partners:
CA_C3433
Transcriptional regulators, AcrR family.
   
    0.656
CA_C3490
DNA gyrase inhibitory protein, GyrI.
 
     0.556
CA_C3435
Hypothetical protein.
  
    0.530
CA_C0376
N-dimethylarginine dimethylaminohydrolase (similar to ykgA B.subtilis).
   
    0.482
bdhB
NADH-dependent butanol dehydrogenase B (BDH II).
   
    0.479
bdhA
NADH-dependent butanol dehydrogenase A (BDH I).
   
    0.479
CA_C3392
NADH-dependent butanol dehydrogenase.
   
    0.479
CA_C0956
Hypothetical protein.
   
    0.477
CA_C1006
MutT-like (Nudix) hydrolase.
  
    0.412
CA_C3492
Uncharacterized conserved protein.
  
    0.410
Your Current Organism:
Clostridium acetobutylicum
NCBI taxonomy Id: 272562
Other names: C. acetobutylicum ATCC 824, Clostridium acetobutylicum ATCC 824, Clostridium acetobutylicum DSM 792, Clostridium acetobutylicum str. ATCC 824, Clostridium acetobutylicum strain ATCC 824
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