STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAJ67227.2Putative tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (453 aa)    
Predicted Functional Partners:
CD630_18441
Fragment of rRNA methyltransferase (C-terminal region).
 
      0.900
CAJ67229.1
Putative conjugative transposon protein Tn1549-like, CTn2-Orf2.
  
    0.786
CAJ67228.1
Conserved hypothetical protein.
  
    0.774
rluA
Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.762
CAJ67225.1
Conserved hypothetical protein, DUF1904 family.
  
    0.708
CAJ67996.1
Putative Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
    0.687
CAJ67386.1
Putative RNA methyltransferase.
 
  
 0.625
CAJ67231.1
Putative conjugative transposon protein Tn1549-like, CTn2-Orf3.
  
    0.569
CAJ67233.1
Putative conjugative transfer protein Tn1549-like, CTn2-Orf5.
  
  
 0.557
CAJ67232.1
Putative conjugative transposon protein Tn1549-like, CTn2-Orf4.
  
    0.554
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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