STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RbsB2ABC-type transport system, sugar-family extracellular solute-binding protein. (320 aa)    
Predicted Functional Partners:
rbsC
ABC-type transport system, ribose-specific permease; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651; Belongs to the binding-protein-dependent transport system permease family.
 0.999
RbsC1
ABC-type transport system, sugar-family permease; Belongs to the binding-protein-dependent transport system permease family.
 0.999
RbsA2
ABC-type transport system, sugar-family ATP-binding protein.
 
 0.998
rbsA
ABC-type transport system, ribose-specific ATP-binding protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
 
 0.990
rbsB
ABC-type transport system, ribose-specific extracellular solute-binding protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.
  
 
0.937
rbsK
Ribokinase, pfkB family; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.870
CAJ68449.2
Transcriptional regulator, repressor ROK family.
 
  
 0.833
CAJ67442.1
Two-component sensor histidine kinase.
  
 
 0.727
CAJ68450.1
Putative N-acetylglucosamine kinase NAGK-like.
 
    0.706
CAJ68451.1
Conserved hypothetical protein.
  
    0.634
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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