Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GDI1396 | iscS | GDI1396 | GDI2371 | Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family. | Putative cysteine desulfurase. | 0.942 |
GDI1396 | iscS-2 | GDI1396 | GDI2372 | Conserved hypothetical protein; Belongs to the sulfur carrier protein TusA family. | Putative cysteine desulfurase. | 0.942 |
GDI1863 | iscS | GDI1863 | GDI2371 | Putative sulfurtransferase tusA; Belongs to the sulfur carrier protein TusA family. | Putative cysteine desulfurase. | 0.980 |
GDI1863 | iscS-2 | GDI1863 | GDI2372 | Putative sulfurtransferase tusA; Belongs to the sulfur carrier protein TusA family. | Putative cysteine desulfurase. | 0.980 |
GDI2396 | fxdB | GDI2396 | GDI2370 | Putative fatty acid synthase. | Putative 2Fe-2S ferredoxin. | 0.995 |
GDI2396 | iscS | GDI2396 | GDI2371 | Putative fatty acid synthase. | Putative cysteine desulfurase. | 0.893 |
GDI2396 | iscS-2 | GDI2396 | GDI2372 | Putative fatty acid synthase. | Putative cysteine desulfurase. | 0.893 |
GDI2396 | nifU | GDI2396 | GDI0447 | Putative fatty acid synthase. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.703 |
fxdB | GDI2396 | GDI2370 | GDI2396 | Putative 2Fe-2S ferredoxin. | Putative fatty acid synthase. | 0.995 |
fxdB | iscA | GDI2370 | GDI3053 | Putative 2Fe-2S ferredoxin. | Putative iron-binding protein iscA; Belongs to the HesB/IscA family. | 0.967 |
fxdB | iscS | GDI2370 | GDI2371 | Putative 2Fe-2S ferredoxin. | Putative cysteine desulfurase. | 0.997 |
fxdB | iscS-2 | GDI2370 | GDI2372 | Putative 2Fe-2S ferredoxin. | Putative cysteine desulfurase. | 0.996 |
fxdB | nifQ | GDI2370 | GDI0445 | Putative 2Fe-2S ferredoxin. | Protein nifQ. | 0.963 |
fxdB | nifU | GDI2370 | GDI0447 | Putative 2Fe-2S ferredoxin. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.990 |
fxdB | nifU-3 | GDI2370 | GDI3055 | Putative 2Fe-2S ferredoxin. | Putative nitrogen fixation protein nifU. | 0.995 |
fxdB | trmU | GDI2370 | GDI2369 | Putative 2Fe-2S ferredoxin. | Putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.802 |
iscA | fxdB | GDI3053 | GDI2370 | Putative iron-binding protein iscA; Belongs to the HesB/IscA family. | Putative 2Fe-2S ferredoxin. | 0.967 |
iscA | iscS | GDI3053 | GDI2371 | Putative iron-binding protein iscA; Belongs to the HesB/IscA family. | Putative cysteine desulfurase. | 0.860 |
iscA | iscS-2 | GDI3053 | GDI2372 | Putative iron-binding protein iscA; Belongs to the HesB/IscA family. | Putative cysteine desulfurase. | 0.823 |
iscA | nifQ | GDI3053 | GDI0445 | Putative iron-binding protein iscA; Belongs to the HesB/IscA family. | Protein nifQ. | 0.556 |
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