STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA3Spermidine/putrescine ABC transporter ATP-binding protein. (280 aa)    
Predicted Functional Partners:
cysT2
Sulfate transport system permease protein.
 
 
  0.967
tppA
Thiamine-binding periplasmic protein precursor-like.
    
  0.876
potB2
Spermidine/putrescine ABC transporter permease protein.
 
  
 0.797
potC2
Spermidine/putrescine ABC transporter permease.
 
  
 0.751
sfuB
Iron ABC transporter permease protein.
 
    0.726
potA4
Spermidine/putrescine ABC transporter ATP-binding protein.
 
  
 
0.586
potD2
Spermidine/putrescine ABC transporter spermidine/putrescine binding protein.
 
   
 0.547
cysT1
Sulfate transport system permease protein.
    0.506
cysS
cysteinyl-tRNA synthetase.
   
    0.463
msmX-3
Sugar ABC transporter ATP-binding protein.
 
 
 
0.458
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.