STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otsATrehalose-6-phosphate synthase. (511 aa)    
Predicted Functional Partners:
amt
Ammonium transporter.
      
 0.738
cdlM
Endoglucanase.
     
 0.691
rrnAC1620
Haloacid dehalogenase-like hydrolase; Catalyzes the dephosphorylation of 2-phosphoglycolate.
 
   
 0.607
prk1
Protein kinase.
   
    0.582
prkA
Kinase anchor protein.
   
    0.582
arcB
Ornithine carbamoyltransferase.
     
 0.554
rrnAC3397
Unknown.
 
    0.542
rrnAC2962
Putative haloacid dehalogenase-like hydrolase.
     
 0.500
mptE
Unknown; Catalyzes the transfer of diphosphate from ATP to 6- hydroxymethyl-7,8-dihydropterin (6-HMD), leading to 6-hydroxymethyl- 7,8-dihydropterin diphosphate (6-HMDP); Belongs to the archaeal 6-HMPDK family.
       0.453
malA
Putative alpha-D-14-glucosidase.
 
  
 0.428
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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