Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ark-4 | kinA6 | rrnAC0410 | rrnAC0412 | Sensory transduction histidine kinase. | Signal-transducing histidine kinase. | 0.835 |
| ark-4 | lemA | rrnAC0410 | rrnAC0409 | Sensory transduction histidine kinase. | LemA protein. | 0.479 |
| ark-4 | oye | rrnAC0410 | rrnAC0413 | Sensory transduction histidine kinase. | Gaf-pac signal-transducing histidine kinase homolog. | 0.650 |
| ark-4 | rre-1 | rrnAC0410 | rrnAC0411 | Sensory transduction histidine kinase. | Response regulator receiver. | 0.964 |
| ark-4 | rrnAC0408 | rrnAC0410 | rrnAC0408 | Sensory transduction histidine kinase. | Unknown. | 0.479 |
| aroA | aroC | rrnAC0127 | rrnAC0124 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.999 |
| aroA | lemA | rrnAC0127 | rrnAC0409 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | LemA protein. | 0.457 |
| aroC | aroA | rrnAC0124 | rrnAC0127 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
| aroC | lemA | rrnAC0124 | rrnAC0409 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | LemA protein. | 0.457 |
| ibp | lemA | rrnAC0906 | rrnAC0409 | Iron-binding protein. | LemA protein. | 0.465 |
| kinA6 | ark-4 | rrnAC0412 | rrnAC0410 | Signal-transducing histidine kinase. | Sensory transduction histidine kinase. | 0.835 |
| kinA6 | lemA | rrnAC0412 | rrnAC0409 | Signal-transducing histidine kinase. | LemA protein. | 0.479 |
| kinA6 | oye | rrnAC0412 | rrnAC0413 | Signal-transducing histidine kinase. | Gaf-pac signal-transducing histidine kinase homolog. | 0.574 |
| kinA6 | rre-1 | rrnAC0412 | rrnAC0411 | Signal-transducing histidine kinase. | Response regulator receiver. | 0.848 |
| kinA6 | rrnAC0408 | rrnAC0412 | rrnAC0408 | Signal-transducing histidine kinase. | Unknown. | 0.479 |
| lemA | ark-4 | rrnAC0409 | rrnAC0410 | LemA protein. | Sensory transduction histidine kinase. | 0.479 |
| lemA | aroA | rrnAC0409 | rrnAC0127 | LemA protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.457 |
| lemA | aroC | rrnAC0409 | rrnAC0124 | LemA protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.457 |
| lemA | ibp | rrnAC0409 | rrnAC0906 | LemA protein. | Iron-binding protein. | 0.465 |
| lemA | kinA6 | rrnAC0409 | rrnAC0412 | LemA protein. | Signal-transducing histidine kinase. | 0.479 |
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