STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC0423Arylsulfatase. (444 aa)    
Predicted Functional Partners:
rrnAC1818
Putative hydrolase.
 
 
 0.730
arcB
Ornithine carbamoyltransferase.
   
    0.698
rrnAC0858
Arylsulfatase.
  
     0.697
fabG4
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
 0.675
ywfD1
Glucose 1-dehydrogenase.
  
 
 0.671
sdr
Short chain dehydrogenase.
  
 
 0.657
bdhA
D-beta-hydroxybutyrate dehydrogenase.
  
 
 0.656
fabG6
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
 0.653
fabG1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
 0.647
rrnAC0424
Unknown.
       0.639
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.